JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EPX_chr17_58187726_58210174	0/0	c0003	2148	24	15	3	5	0	1	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	c0004	2148	22	7	7	0	1	7	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	c0005	2148	17	5	3	6	2	1	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	c0006	2148	9	0	1	7	0	1	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	c0007	2148	9	8	1	0	0	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	c0008	2148	7	0	0	7	0	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	c0009	2148	4	0	0	4	0	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	c0010	2148	4	0	0	4	0	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	c0011	2148	3	0	0	3	0	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	c0012	2148	3	3	0	0	0	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	c0013	2148	3	1	2	0	0	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	c0014	2148	2	2	0	0	0	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	c0015	2148	2	0	0	2	0	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	c0016	2148	2	0	0	1	1	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	c0017	2148	2	0	0	2	0	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	c0018	2148	2	0	0	2	0	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	c0019	2148	1	0	0	0	0	1	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	c0020	2148	1	0	1	0	0	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	c0021	2148	1	1	0	0	0	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	c0022	2148	1	0	0	1	0	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	c0023	2148	1	0	0	0	0	1	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	c0024	2148	1	0	0	0	1	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	c0025	2148	1	0	0	1	0	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	c0026	2148	1	0	0	0	0	1	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	c0027	2148	1	0	0	1	0	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	c0028	2148	1	0	1	0	0	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	c0029	2148	1	0	0	1	0	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	c0030	2148	1	0	0	1	0	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	c0031	2148	1	0	0	0	0	1	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	c0032	2148	1	0	0	1	0	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	c0033	2148	1	0	1	0	0	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	c0034	2148	1	1	0	0	0	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	c0035	2148	1	0	0	1	0	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	c0036	2148	1	0	0	1	0	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	c0037	2148	1	0	1	0	0	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	c0038	2148	1	1	0	0	0	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	c0039	2148	1	0	0	1	0	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	c0040	2148	1	1	0	0	0	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	c0041	2148	1	1	0	0	0	0	copy fasta	EPX	chr17	58187726	58210174
EPX_chr17_58187726_58210174	0/0	c0042	2148	1	0	0	1	0	0	copy fasta	EPX	chr17	58187726	58210174
EPYC_chr12_90958682_91009972	1/1	c0001	969	324	85	58	153	4	22	copy fasta	EPYC	chr12	90958682	91009972
EPYC_chr12_90958682_91009972	0/0	c0002	969	8	0	5	1	0	2	copy fasta	EPYC	chr12	90958682	91009972
EPYC_chr12_90958682_91009972	0/0	c0003	969	6	3	1	0	0	2	copy fasta	EPYC	chr12	90958682	91009972
EPYC_chr12_90958682_91009972	0/0	c0004	969	2	2	0	0	0	0	copy fasta	EPYC	chr12	90958682	91009972
EPYC_chr12_90958682_91009972	0/0	c0005	969	1	0	0	1	0	0	copy fasta	EPYC	chr12	90958682	91009972
EPYC_chr12_90958682_91009972	0/0	c0006	969	1	0	0	0	0	1	copy fasta	EPYC	chr12	90958682	91009972
EPYC_chr12_90958682_91009972	0/0	c0007	969	1	0	0	1	0	0	copy fasta	EPYC	chr12	90958682	91009972
EPYC_chr12_90958682_91009972	0/0	c0008	969	1	1	0	0	0	0	copy fasta	EPYC	chr12	90958682	91009972
EPYC_chr12_90958682_91009972	0/0	c0009	969	1	1	0	0	0	0	copy fasta	EPYC	chr12	90958682	91009972
EPYC_chr12_90958682_91009972	0/0	c0010	969	1	0	0	0	0	1	copy fasta	EPYC	chr12	90958682	91009972