JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EQTN_chr9_27279654_27302150	1/1	c0001	885	343	74	70	143	13	41	copy fasta	EQTN	chr9	27279654	27302150
EQTN_chr9_27279654_27302150	0/0	c0002	885	61	1	4	47	2	7	copy fasta	EQTN	chr9	27279654	27302150
EQTN_chr9_27279654_27302150	0/0	c0003	885	21	13	4	3	0	1	copy fasta	EQTN	chr9	27279654	27302150
EQTN_chr9_27279654_27302150	0/0	c0004	885	17	3	5	7	1	1	copy fasta	EQTN	chr9	27279654	27302150
EQTN_chr9_27279654_27302150	0/0	c0005	885	1	0	1	0	0	0	copy fasta	EQTN	chr9	27279654	27302150
EQTN_chr9_27279654_27302150	0/0	c0006	885	1	1	0	0	0	0	copy fasta	EQTN	chr9	27279654	27302150
EQTN_chr9_27279654_27302150	0/0	c0007	885	1	1	0	0	0	0	copy fasta	EQTN	chr9	27279654	27302150
EQTN_chr9_27279654_27302150	0/0	c0008	885	1	1	0	0	0	0	copy fasta	EQTN	chr9	27279654	27302150
ERAL1_chr17_28850016_28866061	0/0	c0001	1314	250	79	40	98	6	27	copy fasta	ERAL1	chr17	28850016	28866061
ERAL1_chr17_28850016_28866061	1/1	c0002	1314	124	13	19	75	2	13	copy fasta	ERAL1	chr17	28850016	28866061
ERAL1_chr17_28850016_28866061	0/0	c0003	1314	2	0	0	2	0	0	copy fasta	ERAL1	chr17	28850016	28866061
ERAL1_chr17_28850016_28866061	0/0	c0004	1314	1	0	1	0	0	0	copy fasta	ERAL1	chr17	28850016	28866061
ERAL1_chr17_28850016_28866061	0/0	c0005	1314	1	1	0	0	0	0	copy fasta	ERAL1	chr17	28850016	28866061
ERAL1_chr17_28850016_28866061	0/0	c0006	1314	1	0	0	1	0	0	copy fasta	ERAL1	chr17	28850016	28866061
ERAL1_chr17_28850016_28866061	0/0	c0007	1314	1	1	0	0	0	0	copy fasta	ERAL1	chr17	28850016	28866061
ERAP1_chr5_96769484_96812945	1/0	c0001	2826	96	24	13	47	5	6	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	c0002	2826	74	7	5	46	4	12	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	c0003	2826	46	6	15	19	2	4	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	c0004	2826	44	2	3	37	1	1	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	c0005	2826	27	9	4	8	1	5	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	c0006	2826	17	2	7	0	4	4	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	c0007	2826	16	0	8	7	0	1	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/1	c0008	2826	15	4	9	0	1	0	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	c0009	2826	14	7	4	0	0	3	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	c0010	2826	13	0	0	13	0	0	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	c0011	2826	8	0	3	2	0	3	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	c0012	2826	7	6	1	0	0	0	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	c0013	2826	5	5	0	0	0	0	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	c0014	2826	4	4	0	0	0	0	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	c0015	2826	3	3	0	0	0	0	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	c0016	2826	3	0	2	0	0	1	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	c0017	2826	2	2	0	0	0	0	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	c0018	2826	2	1	1	0	0	0	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	c0019	2826	2	2	0	0	0	0	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	c0020	2826	2	0	0	2	0	0	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	c0021	2826	2	2	0	0	0	0	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	c0022	2826	1	1	0	0	0	0	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	c0023	2826	1	1	0	0	0	0	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	c0024	2826	1	0	1	0	0	0	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	c0025	2826	1	1	0	0	0	0	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	c0026	2826	1	0	1	0	0	0	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	c0027	2826	1	1	0	0	0	0	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	c0028	2826	1	1	0	0	0	0	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	c0029	2826	1	0	1	0	0	0	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	c0030	2826	1	1	0	0	0	0	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	c0031	2826	1	0	0	0	0	1	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	c0032	2826	1	0	0	1	0	0	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	c0033	2826	1	0	1	0	0	0	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	c0034	2826	1	0	0	0	0	1	copy fasta	ERAP1	chr5	96769484	96812945
ERAP1_chr5_96769484_96812945	0/0	c0035	2826	1	0	1	0	0	0	copy fasta	ERAP1	chr5	96769484	96812945