JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ERAP2_chr5_96871500_96924703	0/0	c0001	2883	152	34	29	67	6	16	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	1/0	c0002	2883	126	27	25	58	2	13	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	c0003	2883	30	0	2	26	0	2	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	c0004	2883	26	21	3	0	0	2	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	c0005	2883	14	0	1	13	0	0	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	c0006	2883	13	0	6	0	3	4	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/1	c0007	2883	11	0	6	0	3	1	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	c0008	2883	4	0	0	1	0	3	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	c0009	2883	2	2	0	0	0	0	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	c0010	2354	2	0	0	2	0	0	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	c0011	2883	2	0	0	2	0	0	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	c0012	2883	2	1	1	0	0	0	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	c0013	2883	1	1	0	0	0	0	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	c0014	2883	1	1	0	0	0	0	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	c0015	2883	1	1	0	0	0	0	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	c0016	2883	1	0	0	1	0	0	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	c0017	2883	1	0	0	1	0	0	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	c0018	2883	1	1	0	0	0	0	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	c0019	2883	1	0	0	1	0	0	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	c0020	2883	1	0	0	1	0	0	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	c0021	2883	1	0	1	0	0	0	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	c0022	2883	1	1	0	0	0	0	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	c0023	2883	1	1	0	0	0	0	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	c0024	2883	1	0	0	0	0	1	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	c0025	2883	1	1	0	0	0	0	copy fasta	ERAP2	chr5	96871500	96924703
ERAP2_chr5_96871500_96924703	0/0	c0026	2883	1	0	0	1	0	0	copy fasta	ERAP2	chr5	96871500	96924703
ERAS_chrX_48821513_48834869	1/1	c0001	702	301	70	61	125	13	30	copy fasta	ERAS	chrX	48821513	48834869
ERAS_chrX_48821513_48834869	0/0	c0002	702	4	0	0	4	0	0	copy fasta	ERAS	chrX	48821513	48834869
ERAS_chrX_48821513_48834869	0/0	c0003	702	1	1	0	0	0	0	copy fasta	ERAS	chrX	48821513	48834869
ERAS_chrX_48821513_48834869	0/0	c0004	702	1	0	1	0	0	0	copy fasta	ERAS	chrX	48821513	48834869
ERAS_chrX_48821513_48834869	0/0	c0005	702	1	1	0	0	0	0	copy fasta	ERAS	chrX	48821513	48834869
ERBB2_chr17_39695064_39733658	0/0	c0001	3768	144	43	25	57	5	14	copy fasta	ERBB2	chr17	39695064	39733658
ERBB2_chr17_39695064_39733658	0/0	c0002	3768	97	15	23	41	6	12	copy fasta	ERBB2	chr17	39695064	39733658
ERBB2_chr17_39695064_39733658	0/0	c0003	3768	32	2	6	19	4	1	copy fasta	ERBB2	chr17	39695064	39733658
ERBB2_chr17_39695064_39733658	0/0	c0004	3768	11	10	1	0	0	0	copy fasta	ERBB2	chr17	39695064	39733658
ERBB2_chr17_39695064_39733658	0/0	c0005	3768	6	6	0	0	0	0	copy fasta	ERBB2	chr17	39695064	39733658
ERBB2_chr17_39695064_39733658	0/0	c0006	3768	4	0	0	4	0	0	copy fasta	ERBB2	chr17	39695064	39733658
ERBB2_chr17_39695064_39733658	0/0	c0007	3768	2	0	0	2	0	0	copy fasta	ERBB2	chr17	39695064	39733658
ERBB2_chr17_39695064_39733658	0/0	c0008	3768	2	2	0	0	0	0	copy fasta	ERBB2	chr17	39695064	39733658
ERBB2_chr17_39695064_39733658	0/0	c0009	3768	2	2	0	0	0	0	copy fasta	ERBB2	chr17	39695064	39733658
ERBB2_chr17_39695064_39733658	0/0	c0010	3768	2	2	0	0	0	0	copy fasta	ERBB2	chr17	39695064	39733658
ERBB2_chr17_39695064_39733658	0/0	c0011	3768	1	0	1	0	0	0	copy fasta	ERBB2	chr17	39695064	39733658
ERBB2_chr17_39695064_39733658	0/0	c0012	3768	1	0	0	1	0	0	copy fasta	ERBB2	chr17	39695064	39733658
ERBB2_chr17_39695064_39733658	0/0	c0013	3768	1	0	0	1	0	0	copy fasta	ERBB2	chr17	39695064	39733658
ERBB2_chr17_39695064_39733658	0/0	c0014	3768	1	0	0	1	0	0	copy fasta	ERBB2	chr17	39695064	39733658
ERBB2_chr17_39695064_39733658	0/0	c0015	3768	1	0	0	1	0	0	copy fasta	ERBB2	chr17	39695064	39733658
ERBB2_chr17_39695064_39733658	0/0	c0016	3801	1	0	0	1	0	0	copy fasta	ERBB2	chr17	39695064	39733658
ERBB2_chr17_39695064_39733658	0/0	c0017	3768	1	1	0	0	0	0	copy fasta	ERBB2	chr17	39695064	39733658
ERBB2_chr17_39695064_39733658	0/0	c0018	3768	1	1	0	0	0	0	copy fasta	ERBB2	chr17	39695064	39733658
ERBB2_chr17_39695064_39733658	0/0	c0019	3768	1	1	0	0	0	0	copy fasta	ERBB2	chr17	39695064	39733658