Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADGRV1_chr5_90553797_91169437	0/0	c0015	18921	2	2	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0016	18921	2	0	1	1	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0017	18921	2	2	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0018	18921	2	1	1	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0019	18921	2	1	1	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0020	18921	1	0	1	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0021	18921	1	0	1	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0022	18921	1	1	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0023	18921	1	1	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0024	18921	1	1	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0025	18921	1	0	0	0	1	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0026	18921	1	1	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0027	18921	1	0	1	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0028	18921	1	1	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0029	18921	1	1	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0030	18921	1	1	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0031	18921	1	0	0	0	0	1	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0032	18921	1	0	0	1	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0033	18921	1	0	0	0	0	1	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0034	18921	1	0	0	0	0	1	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0035	18921	1	0	1	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0036	18921	1	0	0	0	0	1	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	1/0	c0037	18921	1	0	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0038	18921	1	0	0	0	0	1	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0039	18921	1	0	0	0	0	1	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0040	18921	1	0	0	0	0	1	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0041	18921	1	0	0	1	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0042	18921	1	0	0	1	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0043	18921	1	0	0	0	0	1	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0044	18921	1	1	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0045	18921	1	1	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0046	18921	1	1	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0047	18921	1	0	0	0	0	1	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0048	18921	1	1	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0049	18921	1	1	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0050	18921	1	1	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0051	18921	1	1	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0052	18921	1	0	0	0	0	1	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0053	18921	1	0	0	0	0	1	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0054	18921	1	1	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0055	18921	1	1	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0056	18921	1	1	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0057	18921	1	1	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0058	18921	1	1	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0059	18921	1	1	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0060	18921	1	0	1	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0061	18921	1	1	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0062	18921	1	0	1	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0063	18921	1	1	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	c0064	18921	1	0	0	1	0	0	copy fasta	ADGRV1	chr5	90553797	91169437