JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ERCC2_chr19_45344837_45375573	0/0	c0012	2283	1	1	0	0	0	0	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	c0013	2283	1	0	0	1	0	0	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	c0014	2283	1	0	0	1	0	0	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	c0015	2283	1	1	0	0	0	0	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	c0016	2283	1	1	0	0	0	0	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	c0017	2283	1	0	0	0	0	1	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	c0018	2283	1	0	1	0	0	0	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	c0019	2283	1	0	0	1	0	0	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	c0020	2283	1	0	0	1	0	0	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	c0021	2283	1	0	0	0	0	1	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	c0022	2283	1	0	0	1	0	0	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	c0023	2283	1	0	0	1	0	0	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	c0024	2283	1	0	0	1	0	0	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	c0025	2283	1	1	0	0	0	0	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	c0026	2283	1	1	0	0	0	0	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	c0027	2283	1	0	0	0	0	1	copy fasta	ERCC2	chr19	45344837	45375573
ERCC2_chr19_45344837_45375573	0/0	c0028	2283	1	0	0	0	0	1	copy fasta	ERCC2	chr19	45344837	45375573
ERCC3_chr2_127252290_127299144	1/1	c0001	2349	329	78	67	130	8	44	copy fasta	ERCC3	chr2	127252290	127299144
ERCC3_chr2_127252290_127299144	0/0	c0002	2349	6	5	1	0	0	0	copy fasta	ERCC3	chr2	127252290	127299144
ERCC3_chr2_127252290_127299144	0/0	c0003	2349	4	4	0	0	0	0	copy fasta	ERCC3	chr2	127252290	127299144
ERCC3_chr2_127252290_127299144	0/0	c0004	2349	3	2	1	0	0	0	copy fasta	ERCC3	chr2	127252290	127299144
ERCC3_chr2_127252290_127299144	0/0	c0005	2349	2	2	0	0	0	0	copy fasta	ERCC3	chr2	127252290	127299144
ERCC3_chr2_127252290_127299144	0/0	c0006	2349	1	1	0	0	0	0	copy fasta	ERCC3	chr2	127252290	127299144
ERCC3_chr2_127252290_127299144	0/0	c0007	2349	1	0	0	0	0	1	copy fasta	ERCC3	chr2	127252290	127299144
ERCC3_chr2_127252290_127299144	0/0	c0008	2349	1	0	0	1	0	0	copy fasta	ERCC3	chr2	127252290	127299144
ERCC3_chr2_127252290_127299144	0/0	c0009	2349	1	0	0	1	0	0	copy fasta	ERCC3	chr2	127252290	127299144
ERCC3_chr2_127252290_127299144	0/0	c0010	2349	1	0	0	0	0	1	copy fasta	ERCC3	chr2	127252290	127299144
ERCC3_chr2_127252290_127299144	0/0	c0011	2349	1	0	1	0	0	0	copy fasta	ERCC3	chr2	127252290	127299144
ERCC4_chr16_13915154_13957348	1/0	c0001	2751	198	36	41	90	10	20	copy fasta	ERCC4	chr16	13915154	13957348
ERCC4_chr16_13915154_13957348	0/0	c0002	2751	93	20	10	53	0	10	copy fasta	ERCC4	chr16	13915154	13957348
ERCC4_chr16_13915154_13957348	0/0	c0003	2751	19	17	2	0	0	0	copy fasta	ERCC4	chr16	13915154	13957348
ERCC4_chr16_13915154_13957348	0/0	c0004	2751	6	0	2	0	3	1	copy fasta	ERCC4	chr16	13915154	13957348
ERCC4_chr16_13915154_13957348	0/0	c0005	2751	6	6	0	0	0	0	copy fasta	ERCC4	chr16	13915154	13957348
ERCC4_chr16_13915154_13957348	0/0	c0006	2751	3	0	3	0	0	0	copy fasta	ERCC4	chr16	13915154	13957348
ERCC4_chr16_13915154_13957348	0/0	c0007	2751	3	0	1	0	1	1	copy fasta	ERCC4	chr16	13915154	13957348
ERCC4_chr16_13915154_13957348	0/0	c0008	2751	2	2	0	0	0	0	copy fasta	ERCC4	chr16	13915154	13957348
ERCC4_chr16_13915154_13957348	0/0	c0009	2751	2	1	1	0	0	0	copy fasta	ERCC4	chr16	13915154	13957348
ERCC4_chr16_13915154_13957348	0/0	c0010	2751	1	1	0	0	0	0	copy fasta	ERCC4	chr16	13915154	13957348
ERCC4_chr16_13915154_13957348	0/0	c0011	2751	1	0	1	0	0	0	copy fasta	ERCC4	chr16	13915154	13957348
ERCC4_chr16_13915154_13957348	0/0	c0012	2751	1	0	0	1	0	0	copy fasta	ERCC4	chr16	13915154	13957348
ERCC4_chr16_13915154_13957348	0/1	c0013	2751	1	0	0	0	0	0	copy fasta	ERCC4	chr16	13915154	13957348
ERCC4_chr16_13915154_13957348	0/0	c0014	2751	1	1	0	0	0	0	copy fasta	ERCC4	chr16	13915154	13957348
ERCC4_chr16_13915154_13957348	0/0	c0015	2751	1	1	0	0	0	0	copy fasta	ERCC4	chr16	13915154	13957348
ERCC4_chr16_13915154_13957348	0/0	c0016	2751	1	1	0	0	0	0	copy fasta	ERCC4	chr16	13915154	13957348
ERCC4_chr16_13915154_13957348	0/0	c0017	2751	1	0	1	0	0	0	copy fasta	ERCC4	chr16	13915154	13957348
ERCC5_chr13_102841032_102880995	0/1	c0001	3561	100	16	21	52	0	10	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	c0002	3561	98	10	11	66	5	6	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	c0003	3561	76	13	19	23	8	13	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	c0004	3561	20	14	2	3	0	1	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	c0005	3561	18	17	1	0	0	0	copy fasta	ERCC5	chr13	102841032	102880995