JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ERCC5_chr13_102841032_102880995	0/0	c0006	3561	16	3	1	8	0	4	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	c0007	3561	11	7	4	0	0	0	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	c0008	3561	9	0	0	9	0	0	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	c0009	3561	7	0	2	0	1	4	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	c0010	3561	4	4	0	0	0	0	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	1/0	c0011	3561	4	3	0	0	0	0	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	c0012	3561	3	0	0	3	0	0	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	c0013	3561	2	2	0	0	0	0	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	c0014	3561	2	2	0	0	0	0	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	c0015	3561	2	0	1	0	1	0	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	c0016	3561	2	0	2	0	0	0	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	c0017	3561	2	0	0	2	0	0	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	c0018	3561	1	1	0	0	0	0	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	c0019	3561	1	1	0	0	0	0	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	c0020	3561	1	1	0	0	0	0	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	c0021	3561	1	0	0	1	0	0	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	c0022	3561	1	1	0	0	0	0	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	c0023	3561	1	1	0	0	0	0	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	c0024	3561	1	1	0	0	0	0	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	c0025	3561	1	0	1	0	0	0	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	c0026	3561	1	0	0	1	0	0	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	c0027	3561	1	0	0	0	1	0	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	c0028	3561	1	0	0	0	0	1	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	c0029	3561	1	0	1	0	0	0	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	c0030	3561	1	0	0	1	0	0	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	c0031	3561	1	1	0	0	0	0	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	c0032	3561	1	0	0	1	0	0	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	c0033	3561	1	0	0	1	0	0	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	c0034	3561	1	0	0	0	0	1	copy fasta	ERCC5	chr13	102841032	102880995
ERCC5_chr13_102841032_102880995	0/0	c0035	3561	1	0	0	1	0	0	copy fasta	ERCC5	chr13	102841032	102880995
ERCC6L2_chr9_95870691_96023447	1/1	c0001	4653	203	46	40	87	7	21	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	c0002	4653	73	10	16	34	3	10	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	c0003	4653	30	0	5	24	1	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	c0004	4653	28	4	13	8	0	3	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	c0005	4653	17	5	0	12	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	c0006	4653	7	6	1	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	c0007	4653	5	5	0	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	c0008	4653	4	4	0	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	c0009	4653	2	2	0	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	c0010	4653	2	0	0	2	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	c0011	4653	2	2	0	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	c0012	4653	2	2	0	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	c0013	4653	1	1	0	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	c0014	4653	1	1	0	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	c0015	4653	1	0	0	1	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	c0016	4653	1	0	1	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	c0017	4653	1	0	1	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	c0018	4653	1	1	0	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	c0019	4653	1	0	0	1	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	c0020	4653	1	0	0	1	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447