JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ERCC6L2_chr9_95870691_96023447	0/0	c0021	4653	1	0	0	0	0	1	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	c0022	4653	1	0	1	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	c0023	4653	1	0	0	1	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	c0024	4653	1	1	0	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	c0025	4653	1	0	0	0	0	1	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	c0026	4653	1	0	0	1	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	c0027	4653	1	1	0	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	c0028	4653	1	0	0	0	1	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L2_chr9_95870691_96023447	0/0	c0029	4653	1	1	0	0	0	0	copy fasta	ERCC6L2	chr9	95870691	96023447
ERCC6L_chrX_72199665_72244027	1/1	c0001	3753	267	60	46	122	9	28	copy fasta	ERCC6L	chrX	72199665	72244027
ERCC6L_chrX_72199665_72244027	0/0	c0002	3753	4	4	0	0	0	0	copy fasta	ERCC6L	chrX	72199665	72244027
ERCC6L_chrX_72199665_72244027	0/0	c0003	3753	4	4	0	0	0	0	copy fasta	ERCC6L	chrX	72199665	72244027
ERCC6L_chrX_72199665_72244027	0/0	c0004	3753	2	2	0	0	0	0	copy fasta	ERCC6L	chrX	72199665	72244027
ERCC6L_chrX_72199665_72244027	0/0	c0005	3753	1	0	0	1	0	0	copy fasta	ERCC6L	chrX	72199665	72244027
ERCC6L_chrX_72199665_72244027	0/0	c0006	3753	1	1	0	0	0	0	copy fasta	ERCC6L	chrX	72199665	72244027
ERCC6L_chrX_72199665_72244027	0/0	c0007	3753	1	0	0	1	0	0	copy fasta	ERCC6L	chrX	72199665	72244027
ERCC6L_chrX_72199665_72244027	0/0	c0008	3753	1	0	0	1	0	0	copy fasta	ERCC6L	chrX	72199665	72244027
ERCC6L_chrX_72199665_72244027	0/0	c0009	3753	1	0	1	0	0	0	copy fasta	ERCC6L	chrX	72199665	72244027
ERCC6L_chrX_72199665_72244027	0/0	c0010	3753	1	0	0	1	0	0	copy fasta	ERCC6L	chrX	72199665	72244027
ERCC6L_chrX_72199665_72244027	0/0	c0011	3753	1	1	0	0	0	0	copy fasta	ERCC6L	chrX	72199665	72244027
ERCC6L_chrX_72199665_72244027	0/0	c0012	3758	1	0	0	1	0	0	copy fasta	ERCC6L	chrX	72199665	72244027
ERCC6L_chrX_72199665_72244027	0/0	c0013	3752	1	0	0	1	0	0	copy fasta	ERCC6L	chrX	72199665	72244027
ERCC6_chr10_49449470_49544121	0/0	c0001	4482	77	4	16	44	4	9	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/1	c0002	4482	62	11	2	47	0	1	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	c0003	4482	45	4	15	9	2	15	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	1/0	c0004	4482	42	30	7	0	0	4	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	c0005	4482	42	3	5	26	0	8	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	c0006	4482	35	2	4	29	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	c0007	4482	15	1	5	7	2	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	c0008	4482	11	9	2	0	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	c0009	4482	8	0	1	7	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	c0010	4482	6	4	2	0	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	c0011	4482	4	4	0	0	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	c0012	4482	3	3	0	0	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	c0013	4482	3	2	1	0	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	c0014	4482	3	0	0	3	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	c0015	4482	2	0	0	2	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	c0016	4482	2	2	0	0	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	c0017	4482	2	0	0	2	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	c0018	4482	2	0	2	0	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	c0019	4482	2	0	2	0	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	c0020	4482	1	0	0	1	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	c0021	4482	1	0	0	1	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	c0022	4482	1	0	1	0	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	c0023	4482	1	0	0	1	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	c0024	4482	1	1	0	0	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	c0025	4482	1	1	0	0	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	c0026	4482	1	1	0	0	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	c0027	4482	1	1	0	0	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	c0028	4482	1	0	1	0	0	0	copy fasta	ERCC6	chr10	49449470	49544121