JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ERCC6_chr10_49449470_49544121	0/0	c0029	4482	1	1	0	0	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	c0030	4482	1	0	0	0	0	1	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	c0031	4482	1	0	0	0	0	1	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	c0032	4482	1	1	0	0	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	c0033	4482	1	0	0	0	0	1	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	c0034	4482	1	1	0	0	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	c0035	4482	1	0	0	1	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	c0036	4482	1	1	0	0	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	c0037	4482	1	0	0	1	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	c0038	4482	1	0	0	1	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	c0039	4482	1	0	0	1	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	c0040	4482	1	1	0	0	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49449470_49544121	0/0	c0041	4482	1	0	0	1	0	0	copy fasta	ERCC6	chr10	49449470	49544121
ERCC6_chr10_49510198_49544121	0/0	c0001	3186	203	24	41	97	7	34	copy fasta	ERCC6	chr10	49510198	49544121
ERCC6_chr10_49510198_49544121	0/1	c0002	3186	66	9	4	51	0	1	copy fasta	ERCC6	chr10	49510198	49544121
ERCC6_chr10_49510198_49544121	0/0	c0003	3186	40	7	4	29	0	0	copy fasta	ERCC6	chr10	49510198	49544121
ERCC6_chr10_49510198_49544121	0/0	c0004	3186	25	16	5	0	0	4	copy fasta	ERCC6	chr10	49510198	49544121
ERCC6_chr10_49510198_49544121	0/0	c0005	3186	25	22	3	0	0	0	copy fasta	ERCC6	chr10	49510198	49544121
ERCC6_chr10_49510198_49544121	0/0	c0006	3186	17	1	7	7	2	0	copy fasta	ERCC6	chr10	49510198	49544121
ERCC6_chr10_49510198_49544121	0/0	c0007	3186	4	4	0	0	0	0	copy fasta	ERCC6	chr10	49510198	49544121
ERCC6_chr10_49510198_49544121	0/0	c0008	3186	3	2	1	0	0	0	copy fasta	ERCC6	chr10	49510198	49544121
ERCC6_chr10_49510198_49544121	1/0	c0009	3186	3	2	0	0	0	0	copy fasta	ERCC6	chr10	49510198	49544121
ERCC6_chr10_49510198_49544121	0/0	c0010	3186	2	2	0	0	0	0	copy fasta	ERCC6	chr10	49510198	49544121
ERCC6_chr10_49510198_49544121	0/0	c0011	3186	2	0	0	2	0	0	copy fasta	ERCC6	chr10	49510198	49544121
ERCC6_chr10_49510198_49544121	0/0	c0012	3186	2	0	2	0	0	0	copy fasta	ERCC6	chr10	49510198	49544121
ERCC6_chr10_49510198_49544121	0/0	c0013	3186	1	0	1	0	0	0	copy fasta	ERCC6	chr10	49510198	49544121
ERCC6_chr10_49510198_49544121	0/0	c0014	3186	1	0	0	1	0	0	copy fasta	ERCC6	chr10	49510198	49544121
ERCC6_chr10_49510198_49544121	0/0	c0015	3186	1	0	1	0	0	0	copy fasta	ERCC6	chr10	49510198	49544121
ERCC6_chr10_49510198_49544121	0/0	c0016	3186	1	0	1	0	0	0	copy fasta	ERCC6	chr10	49510198	49544121
ERCC6_chr10_49510198_49544121	0/0	c0017	3186	1	1	0	0	0	0	copy fasta	ERCC6	chr10	49510198	49544121
ERCC6_chr10_49510198_49544121	0/0	c0018	3186	1	0	0	0	0	1	copy fasta	ERCC6	chr10	49510198	49544121
ERCC6_chr10_49510198_49544121	0/0	c0019	3186	1	0	0	1	0	0	copy fasta	ERCC6	chr10	49510198	49544121
ERCC6_chr10_49510198_49544121	0/0	c0020	3186	1	0	0	1	0	0	copy fasta	ERCC6	chr10	49510198	49544121
ERCC6_chr10_49510198_49544121	0/0	c0021	3186	1	0	0	0	1	0	copy fasta	ERCC6	chr10	49510198	49544121
ERCC6_chr10_49510198_49544121	0/0	c0022	3186	1	0	0	1	0	0	copy fasta	ERCC6	chr10	49510198	49544121
ERCC8_chr5_60861454_60950070	1/1	c0001	1191	249	77	37	97	10	26	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	c0002	1191	36	9	15	0	4	8	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	c0003	1191	6	0	3	0	2	1	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	c0004	1191	5	0	0	5	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	c0005	1191	2	2	0	0	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	c0006	1191	1	0	0	1	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	c0007	1191	1	0	1	0	0	0	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	c0008	1191	1	0	0	0	0	1	copy fasta	ERCC8	chr5	60861454	60950070
ERCC8_chr5_60861454_60950070	0/0	c0009	1191	1	0	0	1	0	0	copy fasta	ERCC8	chr5	60861454	60950070
EREG_chr4_74360145_74393749	0/0	c0001	510	240	74	30	104	8	24	copy fasta	EREG	chr4	74360145	74393749
EREG_chr4_74360145_74393749	1/0	c0002	510	110	21	15	58	4	11	copy fasta	EREG	chr4	74360145	74393749
EREG_chr4_74360145_74393749	0/0	c0003	510	3	3	0	0	0	0	copy fasta	EREG	chr4	74360145	74393749
EREG_chr4_74360145_74393749	0/1	c0004	510	3	0	1	0	0	1	copy fasta	EREG	chr4	74360145	74393749
EREG_chr4_74360145_74393749	0/0	c0005	510	1	0	0	1	0	0	copy fasta	EREG	chr4	74360145	74393749
EREG_chr4_74360145_74393749	0/0	c0006	510	1	0	0	1	0	0	copy fasta	EREG	chr4	74360145	74393749