JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ERFE_chr2_238153970_238173890	1/1	c0001	1065	379	68	71	180	17	41	copy fasta	ERFE	chr2	238153970	238173890
ERFE_chr2_238153970_238173890	0/0	c0002	1065	45	12	5	26	0	2	copy fasta	ERFE	chr2	238153970	238173890
ERFE_chr2_238153970_238173890	0/0	c0003	1065	10	0	1	6	1	2	copy fasta	ERFE	chr2	238153970	238173890
ERFE_chr2_238153970_238173890	0/0	c0004	1065	7	7	0	0	0	0	copy fasta	ERFE	chr2	238153970	238173890
ERFE_chr2_238153970_238173890	0/0	c0005	1065	4	0	0	4	0	0	copy fasta	ERFE	chr2	238153970	238173890
ERFE_chr2_238153970_238173890	0/0	c0006	1065	3	3	0	0	0	0	copy fasta	ERFE	chr2	238153970	238173890
ERFE_chr2_238153970_238173890	0/0	c0007	1065	2	0	1	0	0	1	copy fasta	ERFE	chr2	238153970	238173890
ERFE_chr2_238153970_238173890	0/0	c0008	1065	2	0	0	0	0	2	copy fasta	ERFE	chr2	238153970	238173890
ERFE_chr2_238153970_238173890	0/0	c0009	1065	1	1	0	0	0	0	copy fasta	ERFE	chr2	238153970	238173890
ERFE_chr2_238153970_238173890	0/0	c0010	1065	1	0	0	1	0	0	copy fasta	ERFE	chr2	238153970	238173890
ERFE_chr2_238153970_238173890	0/0	c0011	1065	1	1	0	0	0	0	copy fasta	ERFE	chr2	238153970	238173890
ERFE_chr2_238153970_238173890	0/0	c0012	1065	1	0	0	1	0	0	copy fasta	ERFE	chr2	238153970	238173890
ERFL_chr19_41902704_41933449	1/1	c0001	1065	197	17	48	90	15	25	copy fasta	ERFL	chr19	41902704	41933449
ERFL_chr19_41902704_41933449	0/0	c0002	1065	106	61	5	32	0	8	copy fasta	ERFL	chr19	41902704	41933449
ERFL_chr19_41902704_41933449	0/0	c0003	1066	9	0	2	4	0	3	copy fasta	ERFL	chr19	41902704	41933449
ERFL_chr19_41902704_41933449	0/0	c0004	1065	9	9	0	0	0	0	copy fasta	ERFL	chr19	41902704	41933449
ERFL_chr19_41902704_41933449	0/0	c0005	1066	2	0	0	1	0	1	copy fasta	ERFL	chr19	41902704	41933449
ERFL_chr19_41902704_41933449	0/0	c0006	1065	1	1	0	0	0	0	copy fasta	ERFL	chr19	41902704	41933449
ERFL_chr19_41902704_41933449	0/0	c0007	1065	1	0	0	1	0	0	copy fasta	ERFL	chr19	41902704	41933449
ERFL_chr19_41902704_41933449	0/0	c0008	1065	1	0	1	0	0	0	copy fasta	ERFL	chr19	41902704	41933449
ERFL_chr19_41902704_41933449	0/0	c0009	1065	1	0	0	0	1	0	copy fasta	ERFL	chr19	41902704	41933449
ERFL_chr19_41902704_41933449	0/0	c0010	1065	1	0	0	0	0	1	copy fasta	ERFL	chr19	41902704	41933449
ERFL_chr19_41902704_41933449	0/0	c0011	1065	1	1	0	0	0	0	copy fasta	ERFL	chr19	41902704	41933449
ERFL_chr19_41902704_41933449	0/0	c0012	1065	1	1	0	0	0	0	copy fasta	ERFL	chr19	41902704	41933449
ERF_chr19_42242569_42260128	1/0	c0001	1647	210	54	35	82	12	26	copy fasta	ERF	chr19	42242569	42260128
ERF_chr19_42242569_42260128	0/0	c0002	1647	18	0	5	4	2	7	copy fasta	ERF	chr19	42242569	42260128
ERF_chr19_42242569_42260128	0/0	c0003	1647	13	11	2	0	0	0	copy fasta	ERF	chr19	42242569	42260128
ERF_chr19_42242569_42260128	0/0	c0004	1647	8	0	0	7	0	1	copy fasta	ERF	chr19	42242569	42260128
ERF_chr19_42242569_42260128	0/0	c0005	1647	5	5	0	0	0	0	copy fasta	ERF	chr19	42242569	42260128
ERF_chr19_42242569_42260128	0/1	c0006	1647	5	0	0	4	0	0	copy fasta	ERF	chr19	42242569	42260128
ERF_chr19_42242569_42260128	0/0	c0007	1647	2	0	0	1	0	1	copy fasta	ERF	chr19	42242569	42260128
ERF_chr19_42242569_42260128	0/0	c0008	1647	2	0	2	0	0	0	copy fasta	ERF	chr19	42242569	42260128
ERF_chr19_42242569_42260128	0/0	c0009	1647	2	1	0	1	0	0	copy fasta	ERF	chr19	42242569	42260128
ERF_chr19_42242569_42260128	0/0	c0010	1647	1	0	0	1	0	0	copy fasta	ERF	chr19	42242569	42260128
ERF_chr19_42242569_42260128	0/0	c0011	1647	1	1	0	0	0	0	copy fasta	ERF	chr19	42242569	42260128
ERF_chr19_42242569_42260128	0/0	c0012	1647	1	0	0	0	0	1	copy fasta	ERF	chr19	42242569	42260128
ERG28_chr14_75644791_75665876	1/1	c0001	423	415	90	75	193	14	41	copy fasta	ERG28	chr14	75644791	75665876
ERG28_chr14_75644791_75665876	0/0	c0002	423	2	0	2	0	0	0	copy fasta	ERG28	chr14	75644791	75665876
ERG28_chr14_75644791_75665876	0/0	c0003	423	1	0	0	0	0	1	copy fasta	ERG28	chr14	75644791	75665876
ERG28_chr14_75644791_75665876	0/0	c0004	423	1	0	0	1	0	0	copy fasta	ERG28	chr14	75644791	75665876
ERG28_chr14_75644791_75665876	0/0	c0005	423	1	0	1	0	0	0	copy fasta	ERG28	chr14	75644791	75665876
ERGIC1_chr5_172829251_172957683	1/1	c0001	873	330	86	70	122	10	40	copy fasta	ERGIC1	chr5	172829251	172957683
ERGIC1_chr5_172829251_172957683	0/0	c0002	873	1	0	0	1	0	0	copy fasta	ERGIC1	chr5	172829251	172957683
ERGIC1_chr5_172829251_172957683	0/0	c0003	873	1	0	0	1	0	0	copy fasta	ERGIC1	chr5	172829251	172957683
ERGIC1_chr5_172829251_172957683	0/0	c0004	873	1	1	0	0	0	0	copy fasta	ERGIC1	chr5	172829251	172957683
ERGIC1_chr5_172829251_172957683	0/0	c0005	873	1	1	0	0	0	0	copy fasta	ERGIC1	chr5	172829251	172957683
ERGIC2_chr12_29332352_29386172	0/0	c0001	1134	327	77	56	147	10	37	copy fasta	ERGIC2	chr12	29332352	29386172
ERGIC2_chr12_29332352_29386172	0/0	c0002	1134	77	11	16	47	2	1	copy fasta	ERGIC2	chr12	29332352	29386172
ERGIC3_chr20_35537078_35562634	1/1	c0001	1152	290	65	53	133	13	24	copy fasta	ERGIC3	chr20	35537078	35562634
ERGIC3_chr20_35537078_35562634	0/0	c0002	1152	54	10	9	15	3	17	copy fasta	ERGIC3	chr20	35537078	35562634