JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ERGIC3_chr20_35537078_35562634	0/0	c0003	1152	18	16	2	0	0	0	copy fasta	ERGIC3	chr20	35537078	35562634
ERGIC3_chr20_35537078_35562634	0/0	c0004	1152	1	1	0	0	0	0	copy fasta	ERGIC3	chr20	35537078	35562634
ERGIC3_chr20_35537078_35562634	0/0	c0005	1152	1	0	0	0	0	1	copy fasta	ERGIC3	chr20	35537078	35562634
ERG_chr21_38375036_38503477	1/1	c0001	1440	352	76	65	162	13	34	copy fasta	ERG	chr21	38375036	38503477
ERG_chr21_38375036_38503477	0/0	c0002	1440	3	2	1	0	0	0	copy fasta	ERG	chr21	38375036	38503477
ERG_chr21_38375036_38503477	0/0	c0003	1440	2	1	0	0	1	0	copy fasta	ERG	chr21	38375036	38503477
ERG_chr21_38375036_38503477	0/0	c0004	1440	1	1	0	0	0	0	copy fasta	ERG	chr21	38375036	38503477
ERG_chr21_38375036_38503477	0/0	c0005	1440	1	0	0	0	0	1	copy fasta	ERG	chr21	38375036	38503477
ERG_chr21_38375036_38503477	0/0	c0006	1440	1	0	0	0	0	1	copy fasta	ERG	chr21	38375036	38503477
ERH_chr14_69375128_69403299	1/1	c0001	315	397	94	61	176	18	46	copy fasta	ERH	chr14	69375128	69403299
ERH_chr14_69375128_69403299	0/0	c0002	315	1	0	1	0	0	0	copy fasta	ERH	chr14	69375128	69403299
ERI1_chr8_8997897_9038338	0/0	c0001	1048	192	7	40	123	5	17	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/1	c0002	1050	82	36	25	0	8	12	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	1/0	c0003	1050	76	15	11	40	1	8	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	c0004	1050	46	18	2	21	0	5	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	c0005	1048	9	0	0	9	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	c0006	1050	5	4	1	0	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	c0007	1050	4	4	0	0	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	c0008	1048	4	0	1	0	0	3	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	c0009	1050	2	2	0	0	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	c0010	1050	1	1	0	0	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	c0011	1048	1	0	0	1	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	c0012	1048	1	0	0	0	0	1	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	c0013	1048	1	0	0	1	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	c0014	1050	1	0	0	1	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI1_chr8_8997897_9038338	0/0	c0015	1050	1	1	0	0	0	0	copy fasta	ERI1	chr8	8997897	9038338
ERI2_chr16_20791340_20811472	1/1	c0001	2076	176	27	29	97	6	15	copy fasta	ERI2	chr16	20791340	20811472
ERI2_chr16_20791340_20811472	0/0	c0002	2076	99	10	34	28	11	16	copy fasta	ERI2	chr16	20791340	20811472
ERI2_chr16_20791340_20811472	0/0	c0003	2076	67	23	3	36	1	4	copy fasta	ERI2	chr16	20791340	20811472
ERI2_chr16_20791340_20811472	0/0	c0004	2076	33	16	2	13	0	2	copy fasta	ERI2	chr16	20791340	20811472
ERI2_chr16_20791340_20811472	0/0	c0005	2076	9	5	1	0	0	3	copy fasta	ERI2	chr16	20791340	20811472
ERI2_chr16_20791340_20811472	0/0	c0006	2076	7	7	0	0	0	0	copy fasta	ERI2	chr16	20791340	20811472
ERI2_chr16_20791340_20811472	0/0	c0007	2076	4	0	0	4	0	0	copy fasta	ERI2	chr16	20791340	20811472
ERI2_chr16_20791340_20811472	0/0	c0008	2076	2	2	0	0	0	0	copy fasta	ERI2	chr16	20791340	20811472
ERI2_chr16_20791340_20811472	0/0	c0009	2076	2	0	0	0	0	2	copy fasta	ERI2	chr16	20791340	20811472
ERI2_chr16_20791340_20811472	0/0	c0010	2076	2	0	2	0	0	0	copy fasta	ERI2	chr16	20791340	20811472
ERI2_chr16_20791340_20811472	0/0	c0011	2076	2	0	0	0	0	2	copy fasta	ERI2	chr16	20791340	20811472
ERI2_chr16_20791340_20811472	0/0	c0012	2076	2	0	0	0	0	2	copy fasta	ERI2	chr16	20791340	20811472
ERI2_chr16_20791340_20811472	0/0	c0013	2076	1	1	0	0	0	0	copy fasta	ERI2	chr16	20791340	20811472
ERI2_chr16_20791340_20811472	0/0	c0014	2076	1	1	0	0	0	0	copy fasta	ERI2	chr16	20791340	20811472
ERI2_chr16_20791340_20811472	0/0	c0015	2076	1	1	0	0	0	0	copy fasta	ERI2	chr16	20791340	20811472
ERI2_chr16_20791340_20811472	0/0	c0016	2076	1	1	0	0	0	0	copy fasta	ERI2	chr16	20791340	20811472
ERI2_chr16_20791340_20811472	0/0	c0017	2076	1	0	0	1	0	0	copy fasta	ERI2	chr16	20791340	20811472
ERI2_chr16_20791340_20811472	0/0	c0018	2076	1	0	0	1	0	0	copy fasta	ERI2	chr16	20791340	20811472
ERI2_chr16_20791340_20811472	0/0	c0019	2038	1	0	1	0	0	0	copy fasta	ERI2	chr16	20791340	20811472
ERI3_chr1_44216070_44360257	1/1	c0001	1014	337	84	60	153	8	30	copy fasta	ERI3	chr1	44216070	44360257
ERI3_chr1_44216070_44360257	0/0	c0002	1014	1	1	0	0	0	0	copy fasta	ERI3	chr1	44216070	44360257
ERI3_chr1_44216070_44360257	0/0	c0003	1014	1	1	0	0	0	0	copy fasta	ERI3	chr1	44216070	44360257
ERI3_chr1_44216070_44360257	0/0	c0004	1014	1	0	0	1	0	0	copy fasta	ERI3	chr1	44216070	44360257
ERICH1_chr8_659200_736224	0/0	c0001	1332	265	60	42	122	8	33	copy fasta	ERICH1	chr8	659200	736224