JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ERICH1_chr8_659200_736224	0/1	c0002	1332	49	3	17	9	8	11	copy fasta	ERICH1	chr8	659200	736224
ERICH1_chr8_659200_736224	1/0	c0003	1332	38	13	10	10	1	3	copy fasta	ERICH1	chr8	659200	736224
ERICH1_chr8_659200_736224	0/0	c0004	1452	4	4	0	0	0	0	copy fasta	ERICH1	chr8	659200	736224
ERICH1_chr8_659200_736224	0/0	c0005	1332	4	2	1	0	0	1	copy fasta	ERICH1	chr8	659200	736224
ERICH1_chr8_659200_736224	0/0	c0006	1332	3	0	2	0	0	1	copy fasta	ERICH1	chr8	659200	736224
ERICH1_chr8_659200_736224	0/0	c0007	1308	3	3	0	0	0	0	copy fasta	ERICH1	chr8	659200	736224
ERICH1_chr8_659200_736224	0/0	c0008	1332	2	0	0	2	0	0	copy fasta	ERICH1	chr8	659200	736224
ERICH1_chr8_659200_736224	0/0	c0009	1332	2	2	0	0	0	0	copy fasta	ERICH1	chr8	659200	736224
ERICH1_chr8_659200_736224	0/0	c0010	1332	1	1	0	0	0	0	copy fasta	ERICH1	chr8	659200	736224
ERICH1_chr8_659200_736224	0/0	c0011	1332	1	0	0	0	1	0	copy fasta	ERICH1	chr8	659200	736224
ERICH1_chr8_659200_736224	0/0	c0012	1332	1	1	0	0	0	0	copy fasta	ERICH1	chr8	659200	736224
ERICH1_chr8_659200_736224	0/0	c0013	1332	1	1	0	0	0	0	copy fasta	ERICH1	chr8	659200	736224
ERICH1_chr8_659200_736224	0/0	c0014	1332	1	0	0	0	0	1	copy fasta	ERICH1	chr8	659200	736224
ERICH1_chr8_659200_736224	0/0	c0015	1332	1	0	0	1	0	0	copy fasta	ERICH1	chr8	659200	736224
ERICH1_chr8_659200_736224	0/0	c0016	1332	1	0	1	0	0	0	copy fasta	ERICH1	chr8	659200	736224
ERICH1_chr8_659200_736224	0/0	c0017	1332	1	0	1	0	0	0	copy fasta	ERICH1	chr8	659200	736224
ERICH2_chr2_170765378_170803977	0/0	c0001	1311	225	59	38	95	10	23	copy fasta	ERICH2	chr2	170765378	170803977
ERICH2_chr2_170765378_170803977	0/1	c0002	1311	108	6	21	66	7	7	copy fasta	ERICH2	chr2	170765378	170803977
ERICH2_chr2_170765378_170803977	0/0	c0003	1311	18	0	2	11	1	4	copy fasta	ERICH2	chr2	170765378	170803977
ERICH2_chr2_170765378_170803977	1/0	c0004	1311	13	12	0	0	0	0	copy fasta	ERICH2	chr2	170765378	170803977
ERICH2_chr2_170765378_170803977	0/0	c0005	1311	7	5	2	0	0	0	copy fasta	ERICH2	chr2	170765378	170803977
ERICH2_chr2_170765378_170803977	0/0	c0006	1317	6	6	0	0	0	0	copy fasta	ERICH2	chr2	170765378	170803977
ERICH2_chr2_170765378_170803977	0/0	c0007	1311	3	0	0	0	0	3	copy fasta	ERICH2	chr2	170765378	170803977
ERICH2_chr2_170765378_170803977	0/0	c0008	1317	3	0	1	0	0	2	copy fasta	ERICH2	chr2	170765378	170803977
ERICH2_chr2_170765378_170803977	0/0	c0009	1311	1	1	0	0	0	0	copy fasta	ERICH2	chr2	170765378	170803977
ERICH2_chr2_170765378_170803977	0/0	c0010	1311	1	0	1	0	0	0	copy fasta	ERICH2	chr2	170765378	170803977
ERICH2_chr2_170765378_170803977	0/0	c0011	1311	1	1	0	0	0	0	copy fasta	ERICH2	chr2	170765378	170803977
ERICH2_chr2_170765378_170803977	0/0	c0012	1311	1	0	1	0	0	0	copy fasta	ERICH2	chr2	170765378	170803977
ERICH2_chr2_170765378_170803977	0/0	c0013	1323	1	0	0	0	0	1	copy fasta	ERICH2	chr2	170765378	170803977
ERICH2_chr2_170765378_170803977	0/0	c0014	1311	1	1	0	0	0	0	copy fasta	ERICH2	chr2	170765378	170803977
ERICH2_chr2_170765378_170803977	0/0	c0015	1311	1	1	0	0	0	0	copy fasta	ERICH2	chr2	170765378	170803977
ERICH3_chr1_74563123_74678792	0/0	c0001	4593	66	9	16	34	2	5	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	c0002	4593	64	14	19	17	3	11	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/1	c0003	4590	51	7	10	27	3	3	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	c0004	4593	21	9	3	6	0	3	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	c0005	4593	16	8	1	6	0	1	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	c0006	4593	8	8	0	0	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	c0007	4593	6	5	1	0	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	c0008	4593	5	0	0	0	0	5	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	c0009	4593	4	3	1	0	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	c0010	4593	4	4	0	0	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	c0011	4593	3	3	0	0	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	c0012	4593	3	3	0	0	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	c0013	4593	3	3	0	0	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	c0014	4593	2	2	0	0	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	c0015	4593	2	1	1	0	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	c0016	4593	2	0	0	2	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	c0017	4590	2	0	2	0	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	c0018	4593	2	0	2	0	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	c0019	4593	2	0	0	2	0	0	copy fasta	ERICH3	chr1	74563123	74678792