JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ERICH3_chr1_74563123_74678792	0/0	c0020	4593	1	0	1	0	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	c0021	4593	1	0	1	0	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	c0022	4593	1	1	0	0	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	c0023	4590	1	0	1	0	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	c0024	4593	1	1	0	0	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	c0025	4593	1	1	0	0	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	c0026	4593	1	1	0	0	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	c0027	4593	1	1	0	0	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	c0028	4593	1	0	0	1	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	c0029	4593	1	1	0	0	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	c0030	4593	1	0	0	0	0	1	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	1/0	c0031	4593	1	0	0	0	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	c0032	4593	1	1	0	0	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	c0033	4593	1	1	0	0	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	c0034	4593	1	0	0	1	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	c0035	4593	1	0	0	1	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	c0036	4593	1	0	0	1	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	c0037	4590	1	0	0	1	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	c0038	4593	1	0	1	0	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	c0039	4593	1	1	0	0	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	c0040	4593	1	1	0	0	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	c0041	4593	1	0	0	1	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	c0042	4593	1	0	0	0	0	1	copy fasta	ERICH3	chr1	74563123	74678792
ERICH3_chr1_74563123_74678792	0/0	c0043	4593	1	1	0	0	0	0	copy fasta	ERICH3	chr1	74563123	74678792
ERICH4_chr19_41438156_41449765	1/1	c0001	393	406	82	61	199	16	46	copy fasta	ERICH4	chr19	41438156	41449765
ERICH4_chr19_41438156_41449765	0/0	c0002	393	11	11	0	0	0	0	copy fasta	ERICH4	chr19	41438156	41449765
ERICH4_chr19_41438156_41449765	0/0	c0003	393	3	3	0	0	0	0	copy fasta	ERICH4	chr19	41438156	41449765
ERICH4_chr19_41438156_41449765	0/0	c0004	393	1	0	1	0	0	0	copy fasta	ERICH4	chr19	41438156	41449765
ERICH4_chr19_41438156_41449765	0/0	c0005	393	1	0	0	1	0	0	copy fasta	ERICH4	chr19	41438156	41449765
ERICH5_chr8_98059568_98098609	1/1	c0001	1125	408	77	70	197	15	47	copy fasta	ERICH5	chr8	98059568	98098609
ERICH5_chr8_98059568_98098609	0/0	c0002	1125	8	7	1	0	0	0	copy fasta	ERICH5	chr8	98059568	98098609
ERICH5_chr8_98059568_98098609	0/0	c0003	1125	8	8	0	0	0	0	copy fasta	ERICH5	chr8	98059568	98098609
ERICH5_chr8_98059568_98098609	0/0	c0004	1125	4	0	2	0	2	0	copy fasta	ERICH5	chr8	98059568	98098609
ERICH5_chr8_98059568_98098609	0/0	c0005	1125	4	0	0	4	0	0	copy fasta	ERICH5	chr8	98059568	98098609
ERICH5_chr8_98059568_98098609	0/0	c0006	1125	2	0	0	1	0	1	copy fasta	ERICH5	chr8	98059568	98098609
ERICH5_chr8_98059568_98098609	0/0	c0007	1125	1	0	0	0	1	0	copy fasta	ERICH5	chr8	98059568	98098609
ERICH5_chr8_98059568_98098609	0/0	c0008	1125	1	0	1	0	0	0	copy fasta	ERICH5	chr8	98059568	98098609
ERICH5_chr8_98059568_98098609	0/0	c0009	1125	1	1	0	0	0	0	copy fasta	ERICH5	chr8	98059568	98098609
ERICH5_chr8_98059568_98098609	0/0	c0010	1112	1	0	1	0	0	0	copy fasta	ERICH5	chr8	98059568	98098609
ERICH5_chr8_98059568_98098609	0/0	c0011	1125	1	0	1	0	0	0	copy fasta	ERICH5	chr8	98059568	98098609
ERICH5_chr8_98059568_98098609	0/0	c0012	1125	1	1	0	0	0	0	copy fasta	ERICH5	chr8	98059568	98098609
ERICH5_chr8_98059568_98098609	0/0	c0013	1125	1	0	0	1	0	0	copy fasta	ERICH5	chr8	98059568	98098609
ERICH5_chr8_98059568_98098609	0/0	c0014	1125	1	0	0	1	0	0	copy fasta	ERICH5	chr8	98059568	98098609
ERICH6B_chr13_45536294_45620739	0/0	c0001	2091	75	2	9	47	4	13	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/1	c0002	2073	59	13	21	17	2	5	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	1/0	c0003	2091	36	11	4	11	2	7	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	c0004	2091	31	5	2	18	0	6	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	c0005	2091	17	3	1	13	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	c0006	2091	15	9	5	0	0	1	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	c0007	2091	13	0	2	11	0	0	copy fasta	ERICH6B	chr13	45536294	45620739