JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ERICH6B_chr13_45536294_45620739	0/0	c0008	2091	7	6	1	0	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	c0009	2073	7	0	3	3	1	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	c0010	2091	6	6	0	0	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	c0011	2091	6	3	0	3	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	c0012	2091	4	4	0	0	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	c0013	2091	3	3	0	0	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	c0014	2091	3	3	0	0	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	c0015	2091	3	1	2	0	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	c0016	2091	3	1	2	0	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	c0017	2073	3	0	0	2	0	1	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	c0018	2091	2	2	0	0	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	c0019	2091	2	0	0	0	0	2	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	c0020	2091	2	2	0	0	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	c0021	2073	2	2	0	0	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	c0022	2055	2	0	0	2	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	c0023	2091	1	1	0	0	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	c0024	2091	1	0	1	0	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	c0025	2091	1	1	0	0	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	c0026	2091	1	1	0	0	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	c0027	2091	1	1	0	0	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	c0028	2091	1	0	0	1	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	c0029	2091	1	0	0	0	0	1	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	c0030	2091	1	1	0	0	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	c0031	2091	1	0	1	0	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	c0032	2091	1	1	0	0	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	c0033	2091	1	1	0	0	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	c0034	2091	1	1	0	0	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	c0035	2091	1	1	0	0	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	c0036	2091	1	0	0	1	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	c0037	2091	1	0	0	1	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	c0038	2091	1	1	0	0	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	c0039	2091	1	0	0	0	0	1	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	c0040	2091	1	1	0	0	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	c0041	2091	1	1	0	0	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	c0042	2091	1	1	0	0	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	c0043	2091	1	1	0	0	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	c0044	2073	1	0	0	0	0	1	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	c0045	2073	1	1	0	0	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	c0046	2073	1	0	0	0	1	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6B_chr13_45536294_45620739	0/0	c0047	2073	1	1	0	0	0	0	copy fasta	ERICH6B	chr13	45536294	45620739
ERICH6_chr3_150654885_150708920	0/0	c0001	2013	98	9	22	55	1	11	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/1	c0002	1992	86	12	22	39	7	5	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	1/0	c0003	1992	39	11	2	15	2	8	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	c0004	1992	20	8	4	2	0	6	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	c0005	2013	17	9	1	7	0	0	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	c0006	1992	17	4	2	6	1	4	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	c0007	1992	7	0	0	7	0	0	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	c0008	1998	7	3	0	0	0	4	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	c0009	1992	6	6	0	0	0	0	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	c0010	2034	5	0	4	0	1	0	copy fasta	ERICH6	chr3	150654885	150708920