JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ERICH6_chr3_150654885_150708920	0/0	c0011	2001	5	5	0	0	0	0	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	c0012	2001	5	5	0	0	0	0	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	c0013	2001	4	3	1	0	0	0	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	c0014	2013	2	1	1	0	0	0	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	c0015	2013	2	0	1	0	0	1	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	c0016	2013	2	2	0	0	0	0	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	c0017	1992	2	2	0	0	0	0	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	c0018	2001	2	2	0	0	0	0	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	c0019	1980	1	0	0	1	0	0	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	c0020	2010	1	1	0	0	0	0	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	c0021	2034	1	1	0	0	0	0	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	c0022	2019	1	1	0	0	0	0	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	c0023	2013	1	1	0	0	0	0	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	c0024	2013	1	0	1	0	0	0	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	c0025	2013	1	0	0	0	0	1	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	c0026	2013	1	0	0	0	0	1	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	c0027	2013	1	1	0	0	0	0	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	c0028	2013	1	1	0	0	0	0	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	c0029	2013	1	0	1	0	0	0	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	c0030	1992	1	1	0	0	0	0	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	c0031	1992	1	0	0	0	0	1	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	c0032	1992	1	0	0	1	0	0	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	c0033	1992	1	1	0	0	0	0	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	c0034	1992	1	0	0	1	0	0	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	c0035	1971	1	1	0	0	0	0	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	c0036	1971	1	1	0	0	0	0	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	c0037	2028	1	0	0	1	0	0	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	c0038	2016	1	0	0	1	0	0	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	c0039	1998	1	1	0	0	0	0	copy fasta	ERICH6	chr3	150654885	150708920
ERICH6_chr3_150654885_150708920	0/0	c0040	1998	1	1	0	0	0	0	copy fasta	ERICH6	chr3	150654885	150708920
ERLEC1_chr2_53782044_53823796	1/0	c0001	1452	256	74	33	110	12	26	copy fasta	ERLEC1	chr2	53782044	53823796
ERLEC1_chr2_53782044_53823796	0/1	c0002	1452	57	6	18	23	0	9	copy fasta	ERLEC1	chr2	53782044	53823796
ERLEC1_chr2_53782044_53823796	0/0	c0003	1452	53	7	10	31	2	3	copy fasta	ERLEC1	chr2	53782044	53823796
ERLEC1_chr2_53782044_53823796	0/0	c0004	1452	3	3	0	0	0	0	copy fasta	ERLEC1	chr2	53782044	53823796
ERLEC1_chr2_53782044_53823796	0/0	c0005	1452	3	0	0	3	0	0	copy fasta	ERLEC1	chr2	53782044	53823796
ERLEC1_chr2_53782044_53823796	0/0	c0006	1452	1	0	1	0	0	0	copy fasta	ERLEC1	chr2	53782044	53823796
ERLEC1_chr2_53782044_53823796	0/0	c0007	1452	1	0	0	1	0	0	copy fasta	ERLEC1	chr2	53782044	53823796
ERLIN1_chr10_100145094_100191029	1/0	c0001	1047	345	88	38	174	7	37	copy fasta	ERLIN1	chr10	100145094	100191029
ERLIN1_chr10_100145094_100191029	0/1	c0002	1047	40	3	24	10	1	1	copy fasta	ERLIN1	chr10	100145094	100191029
ERLIN1_chr10_100145094_100191029	0/0	c0003	1047	1	1	0	0	0	0	copy fasta	ERLIN1	chr10	100145094	100191029
ERLIN2_chr8_37731634_37763422	0/0	c0001	1020	214	59	56	73	6	20	copy fasta	ERLIN2	chr8	37731634	37763422
ERLIN2_chr8_37731634_37763422	0/0	c0002	1020	7	7	0	0	0	0	copy fasta	ERLIN2	chr8	37731634	37763422
ERLIN2_chr8_37731634_37763422	0/0	c0003	1020	1	1	0	0	0	0	copy fasta	ERLIN2	chr8	37731634	37763422
ERLIN2_chr8_37731634_37763422	0/0	c0004	1020	1	1	0	0	0	0	copy fasta	ERLIN2	chr8	37731634	37763422
ERLIN2_chr8_37731634_37763422	0/0	c0005	1020	1	0	0	1	0	0	copy fasta	ERLIN2	chr8	37731634	37763422
ERMAP_chr1_42812122_42849991	1/1	c0001	1428	296	57	45	151	8	33	copy fasta	ERMAP	chr1	42812122	42849991
ERMAP_chr1_42812122_42849991	0/0	c0002	1428	36	2	14	1	6	13	copy fasta	ERMAP	chr1	42812122	42849991
ERMAP_chr1_42812122_42849991	0/0	c0003	1428	11	11	0	0	0	0	copy fasta	ERMAP	chr1	42812122	42849991
ERMAP_chr1_42812122_42849991	0/0	c0004	1428	10	9	1	0	0	0	copy fasta	ERMAP	chr1	42812122	42849991
ERMAP_chr1_42812122_42849991	0/0	c0005	1428	7	0	1	6	0	0	copy fasta	ERMAP	chr1	42812122	42849991