JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ERMAP_chr1_42812122_42849991	0/0	c0006	1428	5	0	0	5	0	0	copy fasta	ERMAP	chr1	42812122	42849991
ERMAP_chr1_42812122_42849991	0/0	c0007	1428	4	3	1	0	0	0	copy fasta	ERMAP	chr1	42812122	42849991
ERMAP_chr1_42812122_42849991	0/0	c0008	1428	3	2	1	0	0	0	copy fasta	ERMAP	chr1	42812122	42849991
ERMAP_chr1_42812122_42849991	0/0	c0009	1428	3	0	3	0	0	0	copy fasta	ERMAP	chr1	42812122	42849991
ERMAP_chr1_42812122_42849991	0/0	c0010	1428	2	0	0	2	0	0	copy fasta	ERMAP	chr1	42812122	42849991
ERMAP_chr1_42812122_42849991	0/0	c0011	1428	2	2	0	0	0	0	copy fasta	ERMAP	chr1	42812122	42849991
ERMAP_chr1_42812122_42849991	0/0	c0012	1428	1	0	0	1	0	0	copy fasta	ERMAP	chr1	42812122	42849991
ERMAP_chr1_42812122_42849991	0/0	c0013	1428	1	1	0	0	0	0	copy fasta	ERMAP	chr1	42812122	42849991
ERMAP_chr1_42812122_42849991	0/0	c0014	1428	1	1	0	0	0	0	copy fasta	ERMAP	chr1	42812122	42849991
ERMAP_chr1_42812122_42849991	0/0	c0015	1428	1	0	0	1	0	0	copy fasta	ERMAP	chr1	42812122	42849991
ERMAP_chr1_42812122_42849991	0/0	c0016	1428	1	0	0	1	0	0	copy fasta	ERMAP	chr1	42812122	42849991
ERMAP_chr1_42812122_42849991	0/0	c0017	1428	1	1	0	0	0	0	copy fasta	ERMAP	chr1	42812122	42849991
ERMAP_chr1_42812122_42849991	0/0	c0018	1428	1	1	0	0	0	0	copy fasta	ERMAP	chr1	42812122	42849991
ERMARD_chr6_169746622_169786600	0/0	c0001	2037	187	36	43	77	9	22	copy fasta	ERMARD	chr6	169746622	169786600
ERMARD_chr6_169746622_169786600	0/1	c0002	2037	54	9	12	28	1	3	copy fasta	ERMARD	chr6	169746622	169786600
ERMARD_chr6_169746622_169786600	0/0	c0003	2037	45	13	11	16	3	2	copy fasta	ERMARD	chr6	169746622	169786600
ERMARD_chr6_169746622_169786600	0/0	c0004	2037	36	8	3	22	1	2	copy fasta	ERMARD	chr6	169746622	169786600
ERMARD_chr6_169746622_169786600	0/0	c0005	2037	19	0	2	10	0	7	copy fasta	ERMARD	chr6	169746622	169786600
ERMARD_chr6_169746622_169786600	0/0	c0006	2037	6	5	1	0	0	0	copy fasta	ERMARD	chr6	169746622	169786600
ERMARD_chr6_169746622_169786600	0/0	c0007	2037	5	5	0	0	0	0	copy fasta	ERMARD	chr6	169746622	169786600
ERMARD_chr6_169746622_169786600	0/0	c0008	2037	4	4	0	0	0	0	copy fasta	ERMARD	chr6	169746622	169786600
ERMARD_chr6_169746622_169786600	0/0	c0009	2037	3	3	0	0	0	0	copy fasta	ERMARD	chr6	169746622	169786600
ERMARD_chr6_169746622_169786600	0/0	c0010	2037	3	0	0	3	0	0	copy fasta	ERMARD	chr6	169746622	169786600
ERMARD_chr6_169746622_169786600	0/0	c0011	2037	3	3	0	0	0	0	copy fasta	ERMARD	chr6	169746622	169786600
ERMARD_chr6_169746622_169786600	0/0	c0012	2037	2	1	1	0	0	0	copy fasta	ERMARD	chr6	169746622	169786600
ERMARD_chr6_169746622_169786600	0/0	c0013	2037	2	0	0	0	0	2	copy fasta	ERMARD	chr6	169746622	169786600
ERMARD_chr6_169746622_169786600	0/0	c0014	2037	1	0	0	1	0	0	copy fasta	ERMARD	chr6	169746622	169786600
ERMARD_chr6_169746622_169786600	0/0	c0015	2037	1	1	0	0	0	0	copy fasta	ERMARD	chr6	169746622	169786600
ERMARD_chr6_169746622_169786600	0/0	c0016	2037	1	1	0	0	0	0	copy fasta	ERMARD	chr6	169746622	169786600
ERMARD_chr6_169746622_169786600	0/0	c0017	2037	1	1	0	0	0	0	copy fasta	ERMARD	chr6	169746622	169786600
ERMARD_chr6_169746622_169786600	0/0	c0018	2037	1	1	0	0	0	0	copy fasta	ERMARD	chr6	169746622	169786600
ERMARD_chr6_169746622_169786600	0/0	c0019	2037	1	0	0	1	0	0	copy fasta	ERMARD	chr6	169746622	169786600
ERMARD_chr6_169746622_169786600	0/0	c0020	2037	1	1	0	0	0	0	copy fasta	ERMARD	chr6	169746622	169786600
ERMARD_chr6_169746622_169786600	0/0	c0021	2037	1	1	0	0	0	0	copy fasta	ERMARD	chr6	169746622	169786600
ERMARD_chr6_169746622_169786600	0/0	c0022	2037	1	0	1	0	0	0	copy fasta	ERMARD	chr6	169746622	169786600
ERMARD_chr6_169746622_169786600	0/0	c0023	2037	1	1	0	0	0	0	copy fasta	ERMARD	chr6	169746622	169786600
ERMN_chr2_157313631_157330824	1/1	c0001	855	355	82	78	139	12	42	copy fasta	ERMN	chr2	157313631	157330824
ERMN_chr2_157313631_157330824	0/0	c0002	855	10	10	0	0	0	0	copy fasta	ERMN	chr2	157313631	157330824
ERMN_chr2_157313631_157330824	0/0	c0003	855	1	1	0	0	0	0	copy fasta	ERMN	chr2	157313631	157330824
ERMN_chr2_157313631_157330824	0/0	c0004	855	1	0	0	1	0	0	copy fasta	ERMN	chr2	157313631	157330824
ERMN_chr2_157313631_157330824	0/0	c0005	855	1	1	0	0	0	0	copy fasta	ERMN	chr2	157313631	157330824
ERMP1_chr9_5779572_5838117	0/0	c0001	2715	174	12	27	111	4	20	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	1/0	c0002	2715	168	65	34	48	4	16	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/0	c0003	2715	5	5	0	0	0	0	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/0	c0004	2715	4	0	0	4	0	0	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/0	c0005	2715	4	4	0	0	0	0	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/0	c0006	2715	3	0	0	3	0	0	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/0	c0007	2715	3	0	1	0	0	2	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/1	c0008	2715	3	0	0	0	0	2	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/0	c0009	2715	2	2	0	0	0	0	copy fasta	ERMP1	chr9	5779572	5838117