JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ERMP1_chr9_5779572_5838117	0/0	c0010	2715	2	2	0	0	0	0	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/0	c0011	2715	2	2	0	0	0	0	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/0	c0012	2715	2	0	0	2	0	0	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/0	c0013	2715	2	0	2	0	0	0	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/0	c0014	2715	1	0	0	1	0	0	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/0	c0015	2715	1	1	0	0	0	0	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/0	c0016	2715	1	1	0	0	0	0	copy fasta	ERMP1	chr9	5779572	5838117
ERMP1_chr9_5779572_5838117	0/0	c0017	2715	1	0	0	1	0	0	copy fasta	ERMP1	chr9	5779572	5838117
ERN1_chr17_64034142_64135144	0/1	c0001	2934	90	17	22	35	5	10	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	c0002	2934	74	35	14	16	0	9	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	c0003	2934	17	14	3	0	0	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	1/0	c0004	2934	13	11	1	0	0	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	c0005	2934	7	1	2	4	0	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	c0006	2934	5	0	3	0	2	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	c0007	2934	4	1	1	0	1	1	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	c0008	2934	3	0	3	0	0	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	c0009	2934	3	0	2	0	1	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	c0010	2934	2	0	1	0	1	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	c0011	2937	2	2	0	0	0	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	c0012	2934	2	2	0	0	0	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	c0013	2934	2	2	0	0	0	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	c0014	2934	1	1	0	0	0	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	c0015	2934	1	0	1	0	0	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	c0016	2934	1	0	0	1	0	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	c0017	2934	1	0	1	0	0	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	c0018	2934	1	1	0	0	0	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	c0019	2934	1	1	0	0	0	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	c0020	2934	1	1	0	0	0	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	c0021	2934	1	0	1	0	0	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	c0022	2934	1	1	0	0	0	0	copy fasta	ERN1	chr17	64034142	64135144
ERN1_chr17_64034142_64135144	0/0	c0023	2934	1	0	1	0	0	0	copy fasta	ERN1	chr17	64034142	64135144
ERN2_chr16_23685310_23718222	1/1	c0001	2781	204	18	46	108	4	26	copy fasta	ERN2	chr16	23685310	23718222
ERN2_chr16_23685310_23718222	0/0	c0002	2781	142	41	13	72	4	12	copy fasta	ERN2	chr16	23685310	23718222
ERN2_chr16_23685310_23718222	0/0	c0003	2781	28	9	13	2	1	3	copy fasta	ERN2	chr16	23685310	23718222
ERN2_chr16_23685310_23718222	0/0	c0004	2781	6	6	0	0	0	0	copy fasta	ERN2	chr16	23685310	23718222
ERN2_chr16_23685310_23718222	0/0	c0005	2781	5	5	0	0	0	0	copy fasta	ERN2	chr16	23685310	23718222
ERN2_chr16_23685310_23718222	0/0	c0006	2781	3	0	1	0	1	1	copy fasta	ERN2	chr16	23685310	23718222
ERN2_chr16_23685310_23718222	0/0	c0007	2781	2	2	0	0	0	0	copy fasta	ERN2	chr16	23685310	23718222
ERN2_chr16_23685310_23718222	0/0	c0008	2781	2	0	2	0	0	0	copy fasta	ERN2	chr16	23685310	23718222
ERN2_chr16_23685310_23718222	0/0	c0009	2781	1	0	0	0	0	1	copy fasta	ERN2	chr16	23685310	23718222
ERN2_chr16_23685310_23718222	0/0	c0010	2781	1	1	0	0	0	0	copy fasta	ERN2	chr16	23685310	23718222
ERN2_chr16_23685310_23718222	0/0	c0011	2781	1	1	0	0	0	0	copy fasta	ERN2	chr16	23685310	23718222
ERN2_chr16_23685310_23718222	0/0	c0012	2781	1	1	0	0	0	0	copy fasta	ERN2	chr16	23685310	23718222
ERN2_chr16_23685310_23718222	0/0	c0013	2781	1	0	1	0	0	0	copy fasta	ERN2	chr16	23685310	23718222
ERN2_chr16_23685310_23718222	0/0	c0014	2781	1	0	0	1	0	0	copy fasta	ERN2	chr16	23685310	23718222
ERN2_chr16_23685310_23718222	0/0	c0015	2781	1	1	0	0	0	0	copy fasta	ERN2	chr16	23685310	23718222
ERN2_chr16_23685310_23718222	0/0	c0016	2781	1	0	0	1	0	0	copy fasta	ERN2	chr16	23685310	23718222
ERN2_chr16_23685310_23718222	0/0	c0017	2781	1	0	0	1	0	0	copy fasta	ERN2	chr16	23685310	23718222
ERN2_chr16_23685310_23718222	0/0	c0018	2781	1	0	0	1	0	0	copy fasta	ERN2	chr16	23685310	23718222
ERN2_chr16_23685310_23718222	0/0	c0019	2781	1	0	0	1	0	0	copy fasta	ERN2	chr16	23685310	23718222