JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ERN2_chr16_23685310_23718222	0/0	c0020	2781	1	0	0	0	0	1	copy fasta	ERN2	chr16	23685310	23718222
ERN2_chr16_23685310_23718222	0/0	c0021	2781	1	0	0	1	0	0	copy fasta	ERN2	chr16	23685310	23718222
ERN2_chr16_23685310_23718222	0/0	c0022	2781	1	0	0	0	0	1	copy fasta	ERN2	chr16	23685310	23718222
ERN2_chr16_23685310_23718222	0/0	c0023	2781	1	1	0	0	0	0	copy fasta	ERN2	chr16	23685310	23718222
ERN2_chr16_23685310_23718222	0/0	c0024	2781	1	0	0	1	0	0	copy fasta	ERN2	chr16	23685310	23718222
ERN2_chr16_23685310_23718222	0/0	c0025	2781	1	0	0	0	1	0	copy fasta	ERN2	chr16	23685310	23718222
ERN2_chr16_23685310_23718222	0/0	c0026	2781	1	0	0	0	1	0	copy fasta	ERN2	chr16	23685310	23718222
ERN2_chr16_23685310_23718222	0/0	c0027	2781	1	0	0	0	0	1	copy fasta	ERN2	chr16	23685310	23718222
ERN2_chr16_23685310_23718222	0/0	c0028	2781	1	0	0	1	0	0	copy fasta	ERN2	chr16	23685310	23718222
ERO1A_chr14_52634915_52700558	1/1	c0001	1407	387	91	58	183	15	38	copy fasta	ERO1A	chr14	52634915	52700558
ERO1A_chr14_52634915_52700558	0/0	c0002	1407	5	3	2	0	0	0	copy fasta	ERO1A	chr14	52634915	52700558
ERO1A_chr14_52634915_52700558	0/0	c0003	1407	2	1	1	0	0	0	copy fasta	ERO1A	chr14	52634915	52700558
ERO1A_chr14_52634915_52700558	0/0	c0004	1407	1	1	0	0	0	0	copy fasta	ERO1A	chr14	52634915	52700558
ERO1A_chr14_52634915_52700558	0/0	c0005	1407	1	0	1	0	0	0	copy fasta	ERO1A	chr14	52634915	52700558
ERO1A_chr14_52634915_52700558	0/0	c0006	1407	1	0	0	1	0	0	copy fasta	ERO1A	chr14	52634915	52700558
ERO1A_chr14_52634915_52700558	0/0	c0007	1407	1	0	0	0	1	0	copy fasta	ERO1A	chr14	52634915	52700558
ERO1B_chr1_236210101_236286958	0/0	c0001	1404	177	42	40	81	3	11	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/1	c0002	1404	82	2	23	25	8	23	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	c0003	1404	70	3	3	57	0	7	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	1/0	c0004	1404	25	20	3	1	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	c0005	1404	19	16	3	0	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	c0006	1404	13	4	1	6	0	2	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	c0007	1404	2	2	0	0	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	c0008	1404	2	2	0	0	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	c0009	1404	2	2	0	0	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	c0010	1404	1	0	0	0	0	1	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	c0011	1404	1	1	0	0	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	c0012	1404	1	0	0	0	1	0	copy fasta	ERO1B	chr1	236210101	236286958
ERO1B_chr1_236210101_236286958	0/0	c0013	1404	1	0	1	0	0	0	copy fasta	ERO1B	chr1	236210101	236286958
ERP27_chr12_14909039_14943537	1/1	c0001	822	372	80	78	155	16	41	copy fasta	ERP27	chr12	14909039	14943537
ERP27_chr12_14909039_14943537	0/0	c0002	822	15	0	0	10	0	5	copy fasta	ERP27	chr12	14909039	14943537
ERP27_chr12_14909039_14943537	0/0	c0003	822	11	11	0	0	0	0	copy fasta	ERP27	chr12	14909039	14943537
ERP27_chr12_14909039_14943537	0/0	c0004	822	3	3	0	0	0	0	copy fasta	ERP27	chr12	14909039	14943537
ERP27_chr12_14909039_14943537	0/0	c0005	822	1	0	0	1	0	0	copy fasta	ERP27	chr12	14909039	14943537
ERP29_chr12_112008426_112028449	1/1	c0001	786	276	84	47	89	10	44	copy fasta	ERP29	chr12	112008426	112028449
ERP29_chr12_112008426_112028449	0/0	c0002	786	113	7	14	89	0	3	copy fasta	ERP29	chr12	112008426	112028449
ERP29_chr12_112008426_112028449	0/0	c0003	786	6	6	0	0	0	0	copy fasta	ERP29	chr12	112008426	112028449
ERP29_chr12_112008426_112028449	0/0	c0004	786	2	0	1	0	0	1	copy fasta	ERP29	chr12	112008426	112028449
ERP29_chr12_112008426_112028449	0/0	c0005	786	1	1	0	0	0	0	copy fasta	ERP29	chr12	112008426	112028449
ERP44_chr9_99974185_100104000	1/1	c0001	1221	217	71	54	56	12	22	copy fasta	ERP44	chr9	99974185	100104000
ERP44_chr9_99974185_100104000	0/0	c0002	1221	1	0	0	1	0	0	copy fasta	ERP44	chr9	99974185	100104000
ERP44_chr9_99974185_100104000	0/0	c0003	1221	1	1	0	0	0	0	copy fasta	ERP44	chr9	99974185	100104000
ERP44_chr9_99974185_100104000	0/0	c0004	1221	1	0	0	1	0	0	copy fasta	ERP44	chr9	99974185	100104000
ERRFI1_chr1_8006727_8031309	1/1	c0001	1389	365	57	66	192	16	32	copy fasta	ERRFI1	chr1	8006727	8031309
ERRFI1_chr1_8006727_8031309	0/0	c0002	1389	17	16	1	0	0	0	copy fasta	ERRFI1	chr1	8006727	8031309
ERRFI1_chr1_8006727_8031309	0/0	c0003	1389	8	8	0	0	0	0	copy fasta	ERRFI1	chr1	8006727	8031309
ERRFI1_chr1_8006727_8031309	0/0	c0004	1389	5	4	1	0	0	0	copy fasta	ERRFI1	chr1	8006727	8031309
ERRFI1_chr1_8006727_8031309	0/0	c0005	1389	2	2	0	0	0	0	copy fasta	ERRFI1	chr1	8006727	8031309
ERRFI1_chr1_8006727_8031309	0/0	c0006	1389	1	1	0	0	0	0	copy fasta	ERRFI1	chr1	8006727	8031309
ERRFI1_chr1_8006727_8031309	0/0	c0007	1389	1	1	0	0	0	0	copy fasta	ERRFI1	chr1	8006727	8031309