JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ERRFI1_chr1_8006727_8031309	0/0	c0008	1389	1	1	0	0	0	0	copy fasta	ERRFI1	chr1	8006727	8031309
ERRFI1_chr1_8006727_8031309	0/0	c0009	1389	1	1	0	0	0	0	copy fasta	ERRFI1	chr1	8006727	8031309
ERRFI1_chr1_8006727_8031309	0/0	c0010	1389	1	1	0	0	0	0	copy fasta	ERRFI1	chr1	8006727	8031309
ERV3-1_chr7_64985356_65011687	0/0	c0001	1815	149	17	16	85	9	22	copy fasta	ERV3-1	chr7	64985356	65011687
ERV3-1_chr7_64985356_65011687	0/1	c0002	1815	109	16	39	32	6	15	copy fasta	ERV3-1	chr7	64985356	65011687
ERV3-1_chr7_64985356_65011687	0/0	c0003	1815	62	1	8	46	2	5	copy fasta	ERV3-1	chr7	64985356	65011687
ERV3-1_chr7_64985356_65011687	1/0	c0004	1815	58	22	7	28	0	0	copy fasta	ERV3-1	chr7	64985356	65011687
ERV3-1_chr7_64985356_65011687	0/0	c0005	1815	31	24	3	4	0	0	copy fasta	ERV3-1	chr7	64985356	65011687
ERV3-1_chr7_64985356_65011687	0/0	c0006	1815	18	0	0	18	0	0	copy fasta	ERV3-1	chr7	64985356	65011687
ERV3-1_chr7_64985356_65011687	0/0	c0007	1815	7	5	2	0	0	0	copy fasta	ERV3-1	chr7	64985356	65011687
ERV3-1_chr7_64985356_65011687	0/0	c0008	1815	5	0	1	4	0	0	copy fasta	ERV3-1	chr7	64985356	65011687
ERV3-1_chr7_64985356_65011687	0/0	c0009	1815	4	4	0	0	0	0	copy fasta	ERV3-1	chr7	64985356	65011687
ERV3-1_chr7_64985356_65011687	0/0	c0010	1815	3	0	0	0	1	2	copy fasta	ERV3-1	chr7	64985356	65011687
ERV3-1_chr7_64985356_65011687	0/0	c0011	1815	2	2	0	0	0	0	copy fasta	ERV3-1	chr7	64985356	65011687
ERV3-1_chr7_64985356_65011687	0/0	c0012	1815	2	2	0	0	0	0	copy fasta	ERV3-1	chr7	64985356	65011687
ERV3-1_chr7_64985356_65011687	0/0	c0013	1815	2	2	0	0	0	0	copy fasta	ERV3-1	chr7	64985356	65011687
ERV3-1_chr7_64985356_65011687	0/0	c0014	1815	1	0	0	0	0	1	copy fasta	ERV3-1	chr7	64985356	65011687
ERV3-1_chr7_64985356_65011687	0/0	c0015	1815	1	0	1	0	0	0	copy fasta	ERV3-1	chr7	64985356	65011687
ERV3-1_chr7_64985356_65011687	0/0	c0016	1815	1	0	0	1	0	0	copy fasta	ERV3-1	chr7	64985356	65011687
ERV3-1_chr7_64985356_65011687	0/0	c0017	1815	1	0	0	0	0	1	copy fasta	ERV3-1	chr7	64985356	65011687
ERV3-1_chr7_64985356_65011687	0/0	c0018	1815	1	1	0	0	0	0	copy fasta	ERV3-1	chr7	64985356	65011687
ERV3-1_chr7_64985356_65011687	0/0	c0019	1815	1	0	1	0	0	0	copy fasta	ERV3-1	chr7	64985356	65011687
ERVFRD-1_chr6_11097489_11116725	1/1	c0001	1617	400	84	69	182	18	45	copy fasta	ERVFRD-1	chr6	11097489	11116725
ERVFRD-1_chr6_11097489_11116725	0/0	c0002	1617	8	0	0	8	0	0	copy fasta	ERVFRD-1	chr6	11097489	11116725
ERVFRD-1_chr6_11097489_11116725	0/0	c0003	1617	5	5	0	0	0	0	copy fasta	ERVFRD-1	chr6	11097489	11116725
ERVFRD-1_chr6_11097489_11116725	0/0	c0004	1617	4	0	0	4	0	0	copy fasta	ERVFRD-1	chr6	11097489	11116725
ERVFRD-1_chr6_11097489_11116725	0/0	c0005	1617	1	0	0	0	0	1	copy fasta	ERVFRD-1	chr6	11097489	11116725
ERVFRD-1_chr6_11097489_11116725	0/0	c0006	1617	1	0	0	0	0	1	copy fasta	ERVFRD-1	chr6	11097489	11116725
ERVFRD-1_chr6_11097489_11116725	0/0	c0007	1617	1	1	0	0	0	0	copy fasta	ERVFRD-1	chr6	11097489	11116725
ERVFRD-1_chr6_11097489_11116725	0/0	c0008	1617	1	0	0	0	0	1	copy fasta	ERVFRD-1	chr6	11097489	11116725
ERVFRD-1_chr6_11097489_11116725	0/0	c0009	1617	1	0	0	1	0	0	copy fasta	ERVFRD-1	chr6	11097489	11116725
ERVFRD-1_chr6_11097489_11116725	0/0	c0010	1617	1	1	0	0	0	0	copy fasta	ERVFRD-1	chr6	11097489	11116725
ERVFRD-1_chr6_11097489_11116725	0/0	c0011	1617	1	0	0	1	0	0	copy fasta	ERVFRD-1	chr6	11097489	11116725
ERVFRD-1_chr6_11097489_11116725	0/0	c0012	1617	1	1	0	0	0	0	copy fasta	ERVFRD-1	chr6	11097489	11116725
ERVFRD-1_chr6_11097489_11116725	0/0	c0013	1617	1	0	1	0	0	0	copy fasta	ERVFRD-1	chr6	11097489	11116725
ERVH48-1_chr21_42911803_42930630	1/1	c0001	483	377	83	74	163	14	41	copy fasta	ERVH48-1	chr21	42911803	42930630
ERVH48-1_chr21_42911803_42930630	0/0	c0002	483	30	0	2	24	2	2	copy fasta	ERVH48-1	chr21	42911803	42930630
ERVH48-1_chr21_42911803_42930630	0/0	c0003	483	7	0	0	6	0	1	copy fasta	ERVH48-1	chr21	42911803	42930630
ERVH48-1_chr21_42911803_42930630	0/0	c0004	483	5	3	2	0	0	0	copy fasta	ERVH48-1	chr21	42911803	42930630
ERVH48-1_chr21_42911803_42930630	0/0	c0005	483	1	0	0	1	0	0	copy fasta	ERVH48-1	chr21	42911803	42930630
ERVK3-1_chr19_58300377_58321812	1/1	c0001	330	419	93	80	185	16	43	copy fasta	ERVK3-1	chr19	58300377	58321812
ERVK3-1_chr19_58300377_58321812	0/0	c0002	330	2	2	0	0	0	0	copy fasta	ERVK3-1	chr19	58300377	58321812
ERVK3-1_chr19_58300377_58321812	0/0	c0003	330	1	0	0	0	0	1	copy fasta	ERVK3-1	chr19	58300377	58321812
ERVK3-1_chr19_58300377_58321812	0/0	c0004	330	1	1	0	0	0	0	copy fasta	ERVK3-1	chr19	58300377	58321812
ERVK3-1_chr19_58300377_58321812	0/0	c0005	330	1	0	0	1	0	0	copy fasta	ERVK3-1	chr19	58300377	58321812
ERVMER34-1_chr4_52737553_52756425	1/1	c0001	1692	299	50	65	135	10	37	copy fasta	ERVMER34-1	chr4	52737553	52756425
ERVMER34-1_chr4_52737553_52756425	0/0	c0002	1692	47	5	14	22	4	2	copy fasta	ERVMER34-1	chr4	52737553	52756425
ERVMER34-1_chr4_52737553_52756425	0/0	c0003	1692	21	20	1	0	0	0	copy fasta	ERVMER34-1	chr4	52737553	52756425
ERVMER34-1_chr4_52737553_52756425	0/0	c0004	1692	7	7	0	0	0	0	copy fasta	ERVMER34-1	chr4	52737553	52756425
ERVMER34-1_chr4_52737553_52756425	0/0	c0005	1692	7	7	0	0	0	0	copy fasta	ERVMER34-1	chr4	52737553	52756425