JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ERVMER34-1_chr4_52737553_52756425	0/0	c0006	1692	5	0	0	5	0	0	copy fasta	ERVMER34-1	chr4	52737553	52756425
ERVMER34-1_chr4_52737553_52756425	0/0	c0007	1692	2	0	0	2	0	0	copy fasta	ERVMER34-1	chr4	52737553	52756425
ERVMER34-1_chr4_52737553_52756425	0/0	c0008	1692	1	0	0	1	0	0	copy fasta	ERVMER34-1	chr4	52737553	52756425
ERVMER34-1_chr4_52737553_52756425	0/0	c0009	1692	1	1	0	0	0	0	copy fasta	ERVMER34-1	chr4	52737553	52756425
ERVMER34-1_chr4_52737553_52756425	0/0	c0010	1692	1	0	0	0	0	1	copy fasta	ERVMER34-1	chr4	52737553	52756425
ERVMER34-1_chr4_52737553_52756425	0/0	c0011	1692	1	0	0	1	0	0	copy fasta	ERVMER34-1	chr4	52737553	52756425
ERVV-1_chr19_53008921_53021123	1/1	c0001	1434	314	56	58	160	12	26	copy fasta	ERVV-1	chr19	53008921	53021123
ERVV-1_chr19_53008921_53021123	0/0	c0002	1434	19	0	14	0	0	5	copy fasta	ERVV-1	chr19	53008921	53021123
ERVV-1_chr19_53008921_53021123	0/0	c0003	1434	16	0	2	4	1	9	copy fasta	ERVV-1	chr19	53008921	53021123
ERVV-1_chr19_53008921_53021123	0/0	c0004	1434	14	13	1	0	0	0	copy fasta	ERVV-1	chr19	53008921	53021123
ERVV-1_chr19_53008921_53021123	0/0	c0005	1434	10	10	0	0	0	0	copy fasta	ERVV-1	chr19	53008921	53021123
ERVV-1_chr19_53008921_53021123	0/0	c0006	1434	9	9	0	0	0	0	copy fasta	ERVV-1	chr19	53008921	53021123
ERVV-1_chr19_53008921_53021123	0/0	c0007	1434	7	2	1	3	0	1	copy fasta	ERVV-1	chr19	53008921	53021123
ERVV-1_chr19_53008921_53021123	0/0	c0008	1434	5	0	1	0	3	1	copy fasta	ERVV-1	chr19	53008921	53021123
ERVV-1_chr19_53008921_53021123	0/0	c0009	1434	2	2	0	0	0	0	copy fasta	ERVV-1	chr19	53008921	53021123
ERVV-1_chr19_53008921_53021123	0/0	c0010	1434	1	1	0	0	0	0	copy fasta	ERVV-1	chr19	53008921	53021123
ERVV-1_chr19_53008921_53021123	0/0	c0011	1434	1	1	0	0	0	0	copy fasta	ERVV-1	chr19	53008921	53021123
ERVV-1_chr19_53008921_53021123	0/0	c0012	1434	1	1	0	0	0	0	copy fasta	ERVV-1	chr19	53008921	53021123
ERVV-1_chr19_53008921_53021123	0/0	c0013	1434	1	0	0	1	0	0	copy fasta	ERVV-1	chr19	53008921	53021123
ERVV-1_chr19_53008921_53021123	0/0	c0014	1434	1	1	0	0	0	0	copy fasta	ERVV-1	chr19	53008921	53021123
ERVV-1_chr19_53008921_53021123	0/0	c0015	1434	1	0	1	0	0	0	copy fasta	ERVV-1	chr19	53008921	53021123
ERVV-1_chr19_53008921_53021123	0/0	c0016	1434	1	1	0	0	0	0	copy fasta	ERVV-1	chr19	53008921	53021123
ERVV-1_chr19_53008921_53021123	0/0	c0017	1434	1	1	0	0	0	0	copy fasta	ERVV-1	chr19	53008921	53021123
ERVV-2_chr19_53039740_53056680	0/0	c0001	1608	154	36	19	71	5	23	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/1	c0002	1608	85	7	17	48	2	10	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	c0003	1608	65	35	19	0	7	4	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	1/0	c0004	1608	60	1	6	46	1	5	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	c0005	1608	28	11	15	0	1	1	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	c0006	1608	24	0	1	21	0	2	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	c0007	1608	9	1	3	5	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	c0008	1608	3	2	1	0	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	c0009	1608	3	1	0	2	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	c0010	1608	2	2	0	0	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	c0011	1608	2	0	0	1	0	1	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	c0012	1608	2	0	0	0	0	2	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	c0013	1608	1	1	0	0	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	c0014	1608	1	0	0	1	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	c0015	1608	1	0	0	1	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	c0016	1608	1	1	0	0	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	c0017	1608	1	1	0	0	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	c0018	1608	1	0	1	0	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	c0019	1608	1	0	0	1	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	c0020	1608	1	0	0	1	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVV-2_chr19_53039740_53056680	0/0	c0021	1608	1	1	0	0	0	0	copy fasta	ERVV-2	chr19	53039740	53056680
ERVW-1_chr7_92463380_92482946	1/1	c0001	1617	267	53	59	114	9	30	copy fasta	ERVW-1	chr7	92463380	92482946
ERVW-1_chr7_92463380_92482946	0/0	c0002	1617	63	1	4	56	1	1	copy fasta	ERVW-1	chr7	92463380	92482946
ERVW-1_chr7_92463380_92482946	0/0	c0003	1617	53	25	7	11	4	6	copy fasta	ERVW-1	chr7	92463380	92482946
ERVW-1_chr7_92463380_92482946	0/0	c0004	1617	18	0	0	18	0	0	copy fasta	ERVW-1	chr7	92463380	92482946
ERVW-1_chr7_92463380_92482946	0/0	c0005	1617	4	0	0	0	0	4	copy fasta	ERVW-1	chr7	92463380	92482946
ERVW-1_chr7_92463380_92482946	0/0	c0006	1617	3	0	3	0	0	0	copy fasta	ERVW-1	chr7	92463380	92482946