JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ERVW-1_chr7_92463380_92482946	0/0	c0007	1617	2	2	0	0	0	0	copy fasta	ERVW-1	chr7	92463380	92482946
ERVW-1_chr7_92463380_92482946	0/0	c0008	1617	2	0	1	0	0	1	copy fasta	ERVW-1	chr7	92463380	92482946
ERVW-1_chr7_92463380_92482946	0/0	c0009	1617	1	1	0	0	0	0	copy fasta	ERVW-1	chr7	92463380	92482946
ERVW-1_chr7_92463380_92482946	0/0	c0010	1617	1	0	1	0	0	0	copy fasta	ERVW-1	chr7	92463380	92482946
ERVW-1_chr7_92463380_92482946	0/0	c0011	1617	1	1	0	0	0	0	copy fasta	ERVW-1	chr7	92463380	92482946
ERVW-1_chr7_92463380_92482946	0/0	c0012	1617	1	1	0	0	0	0	copy fasta	ERVW-1	chr7	92463380	92482946
ERVW-1_chr7_92463380_92482946	0/0	c0013	1617	1	0	0	1	0	0	copy fasta	ERVW-1	chr7	92463380	92482946
ERVW-1_chr7_92463380_92482946	0/0	c0014	1617	1	1	0	0	0	0	copy fasta	ERVW-1	chr7	92463380	92482946
ERVW-1_chr7_92463380_92482946	0/0	c0015	1617	1	0	1	0	0	0	copy fasta	ERVW-1	chr7	92463380	92482946
ERVW-1_chr7_92463380_92482946	0/0	c0016	1617	1	0	1	0	0	0	copy fasta	ERVW-1	chr7	92463380	92482946
ERVW-1_chr7_92463380_92482946	0/0	c0017	1617	1	1	0	0	0	0	copy fasta	ERVW-1	chr7	92463380	92482946
ERVW-1_chr7_92463380_92482946	0/0	c0018	1617	1	0	1	0	0	0	copy fasta	ERVW-1	chr7	92463380	92482946
ESAM_chr11_124748126_124767290	1/1	c0001	1173	398	79	74	186	14	43	copy fasta	ESAM	chr11	124748126	124767290
ESAM_chr11_124748126_124767290	0/0	c0002	1173	10	6	1	0	1	2	copy fasta	ESAM	chr11	124748126	124767290
ESAM_chr11_124748126_124767290	0/0	c0003	1173	5	5	0	0	0	0	copy fasta	ESAM	chr11	124748126	124767290
ESAM_chr11_124748126_124767290	0/0	c0004	1173	3	3	0	0	0	0	copy fasta	ESAM	chr11	124748126	124767290
ESAM_chr11_124748126_124767290	0/0	c0005	1173	2	0	2	0	0	0	copy fasta	ESAM	chr11	124748126	124767290
ESAM_chr11_124748126_124767290	0/0	c0006	1173	2	0	0	2	0	0	copy fasta	ESAM	chr11	124748126	124767290
ESAM_chr11_124748126_124767290	0/0	c0007	1173	1	0	0	0	0	1	copy fasta	ESAM	chr11	124748126	124767290
ESAM_chr11_124748126_124767290	0/0	c0008	1173	1	1	0	0	0	0	copy fasta	ESAM	chr11	124748126	124767290
ESAM_chr11_124748126_124767290	0/0	c0009	1173	1	1	0	0	0	0	copy fasta	ESAM	chr11	124748126	124767290
ESAM_chr11_124748126_124767290	0/0	c0010	1173	1	0	0	1	0	0	copy fasta	ESAM	chr11	124748126	124767290
ESAM_chr11_124748126_124767290	0/0	c0011	1173	1	1	0	0	0	0	copy fasta	ESAM	chr11	124748126	124767290
ESAM_chr11_124748126_124767290	0/0	c0012	1173	1	0	0	1	0	0	copy fasta	ESAM	chr11	124748126	124767290
ESAM_chr11_124748126_124767290	0/0	c0013	1173	1	0	0	1	0	0	copy fasta	ESAM	chr11	124748126	124767290
ESAM_chr11_124748126_124767290	0/0	c0014	1173	1	0	0	0	1	0	copy fasta	ESAM	chr11	124748126	124767290
ESAM_chr11_124748126_124767290	0/0	c0015	1173	1	0	1	0	0	0	copy fasta	ESAM	chr11	124748126	124767290
ESAM_chr11_124748126_124767290	0/0	c0016	1173	1	0	0	1	0	0	copy fasta	ESAM	chr11	124748126	124767290
ESCO1_chr18_21524284_21605704	0/0	c0001	2523	159	56	33	56	2	12	copy fasta	ESCO1	chr18	21524284	21605704
ESCO1_chr18_21524284_21605704	0/0	c0002	2523	99	14	17	49	3	16	copy fasta	ESCO1	chr18	21524284	21605704
ESCO1_chr18_21524284_21605704	0/0	c0003	2523	29	6	7	5	3	8	copy fasta	ESCO1	chr18	21524284	21605704
ESCO1_chr18_21524284_21605704	1/0	c0004	2523	11	9	1	0	0	0	copy fasta	ESCO1	chr18	21524284	21605704
ESCO1_chr18_21524284_21605704	0/0	c0005	2523	3	3	0	0	0	0	copy fasta	ESCO1	chr18	21524284	21605704
ESCO1_chr18_21524284_21605704	0/0	c0006	2523	2	0	0	0	0	2	copy fasta	ESCO1	chr18	21524284	21605704
ESCO1_chr18_21524284_21605704	0/0	c0007	2523	2	0	2	0	0	0	copy fasta	ESCO1	chr18	21524284	21605704
ESCO1_chr18_21524284_21605704	0/0	c0008	2523	1	1	0	0	0	0	copy fasta	ESCO1	chr18	21524284	21605704
ESCO1_chr18_21524284_21605704	0/0	c0009	2523	1	0	0	1	0	0	copy fasta	ESCO1	chr18	21524284	21605704
ESCO1_chr18_21524284_21605704	0/0	c0010	2523	1	1	0	0	0	0	copy fasta	ESCO1	chr18	21524284	21605704
ESCO1_chr18_21524284_21605704	0/1	c0011	2523	1	0	0	0	0	0	copy fasta	ESCO1	chr18	21524284	21605704
ESCO1_chr18_21524284_21605704	0/0	c0012	2523	1	0	0	1	0	0	copy fasta	ESCO1	chr18	21524284	21605704
ESCO2_chr8_27769554_27810316	1/1	c0001	1806	277	69	47	112	11	36	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	c0002	1806	71	12	5	48	1	5	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	c0003	1806	18	6	0	12	0	0	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	c0004	1806	2	2	0	0	0	0	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	c0005	1806	2	0	1	0	0	1	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	c0006	1806	2	2	0	0	0	0	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	c0007	1806	2	1	1	0	0	0	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	c0008	1806	1	0	0	1	0	0	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	c0009	1806	1	0	0	1	0	0	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	c0010	1806	1	0	0	1	0	0	copy fasta	ESCO2	chr8	27769554	27810316