JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ESCO2_chr8_27769554_27810316	0/0	c0011	1806	1	0	0	1	0	0	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	c0012	1806	1	0	0	0	0	1	copy fasta	ESCO2	chr8	27769554	27810316
ESCO2_chr8_27769554_27810316	0/0	c0013	1806	1	0	0	0	0	1	copy fasta	ESCO2	chr8	27769554	27810316
ESD_chr13_46766256_46802161	1/1	c0001	849	309	78	59	127	12	31	copy fasta	ESD	chr13	46766256	46802161
ESD_chr13_46766256_46802161	0/0	c0002	849	84	4	12	62	2	4	copy fasta	ESD	chr13	46766256	46802161
ESD_chr13_46766256_46802161	0/0	c0003	849	5	5	0	0	0	0	copy fasta	ESD	chr13	46766256	46802161
ESD_chr13_46766256_46802161	0/0	c0004	849	3	0	0	3	0	0	copy fasta	ESD	chr13	46766256	46802161
ESD_chr13_46766256_46802161	0/0	c0005	849	3	1	0	0	0	2	copy fasta	ESD	chr13	46766256	46802161
ESD_chr13_46766256_46802161	0/0	c0006	849	1	0	0	0	0	1	copy fasta	ESD	chr13	46766256	46802161
ESD_chr13_46766256_46802161	0/0	c0007	849	1	0	1	0	0	0	copy fasta	ESD	chr13	46766256	46802161
ESF1_chr20_13709325_13789919	0/0	c0001	2556	188	57	20	79	6	26	copy fasta	ESF1	chr20	13709325	13789919
ESF1_chr20_13709325_13789919	0/0	c0002	2556	79	7	21	37	5	9	copy fasta	ESF1	chr20	13709325	13789919
ESF1_chr20_13709325_13789919	1/0	c0003	2556	57	10	13	21	4	8	copy fasta	ESF1	chr20	13709325	13789919
ESF1_chr20_13709325_13789919	0/1	c0004	2556	23	2	6	9	1	4	copy fasta	ESF1	chr20	13709325	13789919
ESF1_chr20_13709325_13789919	0/0	c0005	2556	14	0	1	13	0	0	copy fasta	ESF1	chr20	13709325	13789919
ESF1_chr20_13709325_13789919	0/0	c0006	2553	10	0	0	10	0	0	copy fasta	ESF1	chr20	13709325	13789919
ESF1_chr20_13709325_13789919	0/0	c0007	2556	3	3	0	0	0	0	copy fasta	ESF1	chr20	13709325	13789919
ESF1_chr20_13709325_13789919	0/0	c0008	2556	2	0	0	2	0	0	copy fasta	ESF1	chr20	13709325	13789919
ESF1_chr20_13709325_13789919	0/0	c0009	2556	2	0	0	2	0	0	copy fasta	ESF1	chr20	13709325	13789919
ESF1_chr20_13709325_13789919	0/0	c0010	2556	1	0	0	1	0	0	copy fasta	ESF1	chr20	13709325	13789919
ESF1_chr20_13709325_13789919	0/0	c0011	2556	1	1	0	0	0	0	copy fasta	ESF1	chr20	13709325	13789919
ESF1_chr20_13709325_13789919	0/0	c0012	2556	1	0	0	1	0	0	copy fasta	ESF1	chr20	13709325	13789919
ESF1_chr20_13709325_13789919	0/0	c0013	2556	1	0	1	0	0	0	copy fasta	ESF1	chr20	13709325	13789919
ESF1_chr20_13709325_13789919	0/0	c0014	2556	1	0	0	0	0	1	copy fasta	ESF1	chr20	13709325	13789919
ESF1_chr20_13709325_13789919	0/0	c0015	2556	1	0	1	0	0	0	copy fasta	ESF1	chr20	13709325	13789919
ESF1_chr20_13709325_13789919	0/0	c0016	2556	1	1	0	0	0	0	copy fasta	ESF1	chr20	13709325	13789919
ESF1_chr20_13709325_13789919	0/0	c0017	2556	1	0	0	1	0	0	copy fasta	ESF1	chr20	13709325	13789919
ESF1_chr20_13709325_13789919	0/0	c0018	2556	1	0	1	0	0	0	copy fasta	ESF1	chr20	13709325	13789919
ESF1_chr20_13709325_13789919	0/0	c0019	2556	1	0	0	1	0	0	copy fasta	ESF1	chr20	13709325	13789919
ESF1_chr20_13709325_13789919	0/0	c0020	2556	1	1	0	0	0	0	copy fasta	ESF1	chr20	13709325	13789919
ESF1_chr20_13709325_13789919	0/0	c0021	2556	1	0	0	1	0	0	copy fasta	ESF1	chr20	13709325	13789919
ESM1_chr5_54972867_54990593	1/1	c0001	555	434	88	76	203	18	47	copy fasta	ESM1	chr5	54972867	54990593
ESM1_chr5_54972867_54990593	0/0	c0002	555	6	5	1	0	0	0	copy fasta	ESM1	chr5	54972867	54990593
ESM1_chr5_54972867_54990593	0/0	c0003	555	1	0	0	0	0	1	copy fasta	ESM1	chr5	54972867	54990593
ESM1_chr5_54972867_54990593	0/0	c0004	541	1	0	0	1	0	0	copy fasta	ESM1	chr5	54972867	54990593
ESM1_chr5_54972867_54990593	0/0	c0005	555	1	1	0	0	0	0	copy fasta	ESM1	chr5	54972867	54990593
ESM1_chr5_54972867_54990593	0/0	c0006	555	1	0	1	0	0	0	copy fasta	ESM1	chr5	54972867	54990593
ESM1_chr5_54972867_54990593	0/0	c0007	555	1	1	0	0	0	0	copy fasta	ESM1	chr5	54972867	54990593
ESM1_chr5_54972867_54990593	0/0	c0008	555	1	1	0	0	0	0	copy fasta	ESM1	chr5	54972867	54990593
ESPL1_chr12_53263299_53298638	0/1	c0001	6363	100	11	17	54	2	15	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	c0002	6363	75	16	16	32	3	8	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	c0003	6363	46	4	7	33	0	2	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	c0004	6363	19	3	9	0	3	4	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	c0005	6363	14	13	1	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	c0006	6363	8	8	0	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	c0007	6363	5	5	0	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	c0008	6363	5	5	0	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	c0009	6363	5	0	0	3	0	2	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	c0010	6363	4	0	0	4	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	c0011	6363	4	4	0	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638