JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ESPL1_chr12_53263299_53298638	0/0	c0012	6363	4	4	0	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	c0013	6363	3	0	3	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	c0014	6363	3	3	0	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	c0015	6363	3	1	2	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	c0016	6363	2	2	0	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	c0017	6363	2	0	0	0	0	2	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	c0018	6363	2	2	0	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	c0019	6363	1	0	1	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	c0020	6363	1	0	1	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	c0021	6363	1	1	0	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	c0022	6363	1	0	0	1	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	c0023	6363	1	1	0	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	c0024	6363	1	1	0	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	c0025	6363	1	0	1	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	c0026	6363	1	0	0	0	0	1	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	c0027	6363	1	0	0	0	1	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	c0028	6363	1	0	0	1	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	c0029	6363	1	0	0	1	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	c0030	6363	1	0	1	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	c0031	6363	1	0	0	1	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	c0032	6363	1	1	0	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	c0033	6363	1	1	0	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	c0034	6363	1	1	0	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	c0035	6363	1	1	0	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	c0036	6363	1	1	0	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	c0037	6363	1	1	0	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	c0038	6363	1	1	0	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	c0039	6363	1	0	0	1	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	c0040	6363	1	1	0	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	c0041	6363	1	0	1	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	c0042	6363	1	1	0	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	c0043	6363	1	1	0	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	c0044	6363	1	0	0	1	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	c0045	6363	1	0	0	0	1	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	1/0	c0046	6363	1	0	0	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	c0047	6363	1	0	1	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPL1_chr12_53263299_53298638	0/0	c0048	6363	1	0	1	0	0	0	copy fasta	ESPL1	chr12	53263299	53298638
ESPNL_chr2_238095340_238138287	0/0	c0001	3018	27	3	9	14	0	1	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0002	3018	24	0	1	18	2	3	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/1	c0003	3018	22	1	13	4	1	2	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0004	3018	17	2	0	15	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0005	3018	14	9	2	3	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0006	3018	10	7	1	1	0	1	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0007	3018	10	6	0	4	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0008	3018	10	0	0	9	0	1	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0009	3018	9	1	0	8	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0010	3018	9	0	0	6	0	3	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0011	3018	9	0	3	6	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0012	3018	8	5	1	2	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0013	3018	8	2	1	3	0	2	copy fasta	ESPNL	chr2	238095340	238138287