JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ESPNL_chr2_238095340_238138287	0/0	c0014	3018	7	0	3	3	0	1	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0015	3018	7	0	1	3	0	3	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0016	3018	7	0	0	7	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0017	3018	7	0	4	2	0	1	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0018	3018	7	1	0	4	1	1	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0019	3018	7	6	0	1	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0020	3018	6	0	2	4	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0021	3018	6	1	4	0	0	1	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0022	3018	6	0	4	0	0	2	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0023	3018	6	6	0	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0024	3018	6	0	1	2	1	2	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0025	3018	5	0	0	5	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0026	3018	5	0	2	0	0	3	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0027	3018	5	3	0	2	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0028	3018	4	1	0	1	1	1	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0029	3018	4	0	0	0	0	4	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0030	3018	4	0	0	4	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0031	3018	4	1	2	1	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	1/0	c0032	3018	4	0	2	1	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0033	3018	3	0	2	0	1	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0034	3018	3	3	0	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0035	3018	3	0	1	2	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0036	3018	3	0	0	3	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0037	3018	3	0	0	2	0	1	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0038	3018	3	0	1	2	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0039	3018	2	1	1	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0040	3018	2	2	0	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0041	3018	2	0	0	2	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0042	3018	2	0	1	0	0	1	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0043	3018	2	0	0	2	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0044	3018	2	2	0	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0045	3018	2	2	0	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0046	3018	2	2	0	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0047	3018	2	0	1	1	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0048	3018	2	0	0	1	0	1	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0049	3018	2	0	2	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0050	3018	2	0	1	1	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0051	3018	2	0	2	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0052	3018	1	1	0	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0053	3018	1	1	0	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0054	3018	1	1	0	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0055	3018	1	1	0	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0056	3018	1	1	0	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0057	3018	1	0	1	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0058	3018	1	0	0	1	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0059	3018	1	0	0	0	0	1	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0060	3018	1	0	0	0	1	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0061	3018	1	0	1	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0062	3018	1	0	1	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0063	3018	1	0	0	0	1	0	copy fasta	ESPNL	chr2	238095340	238138287