Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADH1B_chr4_99299971_99326401	0/0	c0011	1128	1	1	0	0	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	c0012	1128	1	0	0	1	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	c0013	1128	1	1	0	0	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	c0014	1128	1	0	0	0	1	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1B_chr4_99299971_99326401	0/0	c0015	1128	1	0	1	0	0	0	copy fasta	ADH1B	chr4	99299971	99326401
ADH1C_chr4_99331497_99357746	0/0	c0001	1128	172	43	13	92	5	19	copy fasta	ADH1C	chr4	99331497	99357746
ADH1C_chr4_99331497_99357746	1/1	c0002	1128	117	42	34	24	9	6	copy fasta	ADH1C	chr4	99331497	99357746
ADH1C_chr4_99331497_99357746	0/0	c0003	1128	40	10	12	6	2	10	copy fasta	ADH1C	chr4	99331497	99357746
ADH1C_chr4_99331497_99357746	0/0	c0004	1128	23	2	8	11	0	2	copy fasta	ADH1C	chr4	99331497	99357746
ADH1C_chr4_99331497_99357746	0/0	c0005	1128	3	0	2	0	0	1	copy fasta	ADH1C	chr4	99331497	99357746
ADH1C_chr4_99331497_99357746	0/0	c0006	1128	2	0	2	0	0	0	copy fasta	ADH1C	chr4	99331497	99357746
ADH1C_chr4_99331497_99357746	0/0	c0007	1128	1	1	0	0	0	0	copy fasta	ADH1C	chr4	99331497	99357746
ADH1C_chr4_99331497_99357746	0/0	c0008	1128	1	0	1	0	0	0	copy fasta	ADH1C	chr4	99331497	99357746
ADH1C_chr4_99331497_99357746	0/0	c0009	1128	1	0	0	1	0	0	copy fasta	ADH1C	chr4	99331497	99357746
ADH4_chr4_99118658_99149297	0/0	c0001	1143	291	77	53	128	10	23	copy fasta	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	0/1	c0002	1143	27	4	17	0	4	1	copy fasta	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	1/0	c0003	1143	8	6	1	0	0	0	copy fasta	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	0/0	c0004	1143	4	0	0	4	0	0	copy fasta	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	0/0	c0005	1143	2	2	0	0	0	0	copy fasta	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	0/0	c0006	1143	1	0	0	0	0	1	copy fasta	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	0/0	c0007	1143	1	0	0	1	0	0	copy fasta	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	0/0	c0008	1143	1	0	1	0	0	0	copy fasta	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	0/0	c0009	1143	1	0	0	1	0	0	copy fasta	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	0/0	c0010	1143	1	1	0	0	0	0	copy fasta	ADH4	chr4	99118658	99149297
ADH4_chr4_99118658_99149297	0/0	c0011	1143	1	0	0	0	0	1	copy fasta	ADH4	chr4	99118658	99149297
ADH5_chr4_99065978_99093788	1/1	c0001	1125	312	68	66	132	13	31	copy fasta	ADH5	chr4	99065978	99093788
ADH5_chr4_99065978_99093788	0/0	c0002	1125	18	14	3	0	1	0	copy fasta	ADH5	chr4	99065978	99093788
ADH5_chr4_99065978_99093788	0/0	c0003	1125	4	4	0	0	0	0	copy fasta	ADH5	chr4	99065978	99093788
ADH5_chr4_99065978_99093788	0/0	c0004	1125	1	0	0	0	0	1	copy fasta	ADH5	chr4	99065978	99093788
ADH5_chr4_99065978_99093788	0/0	c0005	1125	1	0	1	0	0	0	copy fasta	ADH5	chr4	99065978	99093788
ADH6_chr4_99197639_99224246	1/1	c0001	1128	291	71	66	110	8	34	copy fasta	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	c0002	1128	9	8	1	0	0	0	copy fasta	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	c0003	1128	7	7	0	0	0	0	copy fasta	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	c0004	1128	1	1	0	0	0	0	copy fasta	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	c0005	1128	1	0	0	1	0	0	copy fasta	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	c0006	1128	1	1	0	0	0	0	copy fasta	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	c0007	1128	1	0	0	1	0	0	copy fasta	ADH6	chr4	99197639	99224246
ADH6_chr4_99197639_99224246	0/0	c0008	1128	1	0	1	0	0	0	copy fasta	ADH6	chr4	99197639	99224246
ADH7_chr4_99407263_99440342	1/1	c0001	1125	325	57	66	146	11	43	copy fasta	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	c0002	1125	50	12	1	36	0	1	copy fasta	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	c0003	1125	20	19	1	0	0	0	copy fasta	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	c0004	1125	7	0	6	0	1	0	copy fasta	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	c0005	1125	2	2	0	0	0	0	copy fasta	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	c0006	1125	1	0	0	1	0	0	copy fasta	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	c0007	1125	1	1	0	0	0	0	copy fasta	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	c0008	1125	1	1	0	0	0	0	copy fasta	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	c0009	1125	1	0	1	0	0	0	copy fasta	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	c0010	1125	1	1	0	0	0	0	copy fasta	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	c0011	1125	1	1	0	0	0	0	copy fasta	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	c0012	1125	1	1	0	0	0	0	copy fasta	ADH7	chr4	99407263	99440342