JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ESPNL_chr2_238095340_238138287	0/0	c0114	3018	1	0	0	0	0	1	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0115	3018	1	0	0	1	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0116	3018	1	0	0	0	1	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0117	3018	1	0	0	1	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0118	3018	1	1	0	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0119	3018	1	1	0	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0120	3018	1	0	1	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0121	3018	1	1	0	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0122	3018	1	0	0	1	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0123	3018	1	0	0	0	0	1	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0124	3018	1	1	0	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0125	3018	1	0	0	1	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0126	3018	1	0	0	1	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0127	3018	1	0	0	1	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0128	3018	1	1	0	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0129	3018	1	1	0	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0130	3018	1	0	1	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPNL_chr2_238095340_238138287	0/0	c0131	3018	1	1	0	0	0	0	copy fasta	ESPNL	chr2	238095340	238138287
ESPN_chr1_6419776_6465944	1/1	c0001	2565	126	9	39	51	6	19	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	c0002	2565	48	13	10	21	1	3	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	c0003	2565	36	27	6	0	1	2	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	c0004	2565	19	17	0	2	0	0	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	c0005	2565	7	0	3	4	0	0	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	c0006	2565	7	7	0	0	0	0	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	c0007	2565	3	3	0	0	0	0	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	c0008	2565	2	2	0	0	0	0	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	c0009	2565	2	2	0	0	0	0	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	c0010	2565	2	2	0	0	0	0	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	c0011	2565	2	2	0	0	0	0	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	c0012	2565	2	2	0	0	0	0	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	c0013	2565	2	2	0	0	0	0	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	c0014	2565	1	0	0	1	0	0	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	c0015	2565	1	0	1	0	0	0	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	c0016	2565	1	0	0	0	0	1	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	c0017	2565	1	1	0	0	0	0	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	c0018	2565	1	0	1	0	0	0	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	c0019	2565	1	0	0	1	0	0	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	c0020	2565	1	0	1	0	0	0	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	c0021	2565	1	0	0	0	0	1	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	c0022	2565	1	1	0	0	0	0	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	c0023	2565	1	1	0	0	0	0	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	c0024	2565	1	1	0	0	0	0	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	c0025	2565	1	0	1	0	0	0	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	c0026	2565	1	1	0	0	0	0	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	c0027	2565	1	0	0	1	0	0	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	c0028	2565	1	1	0	0	0	0	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	c0029	2565	1	1	0	0	0	0	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	c0030	2565	1	1	0	0	0	0	copy fasta	ESPN	chr1	6419776	6465944
ESPN_chr1_6419776_6465944	0/0	c0031	2565	1	0	0	1	0	0	copy fasta	ESPN	chr1	6419776	6465944
ESR1_chr6_151802682_152108274	0/0	c0001	1788	80	34	11	26	1	8	copy fasta	ESR1	chr6	151802682	152108274