JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ESR1_chr6_151802682_152108274	0/1	c0002	1788	66	26	7	19	4	9	copy fasta	ESR1	chr6	151802682	152108274
ESR1_chr6_151802682_152108274	0/0	c0003	1788	32	2	4	21	2	3	copy fasta	ESR1	chr6	151802682	152108274
ESR1_chr6_151802682_152108274	0/0	c0004	1788	17	6	1	8	0	2	copy fasta	ESR1	chr6	151802682	152108274
ESR1_chr6_151802682_152108274	0/0	c0005	1788	14	0	1	10	0	3	copy fasta	ESR1	chr6	151802682	152108274
ESR1_chr6_151802682_152108274	0/0	c0006	1788	10	5	1	2	0	2	copy fasta	ESR1	chr6	151802682	152108274
ESR1_chr6_151802682_152108274	0/0	c0007	1788	8	1	1	6	0	0	copy fasta	ESR1	chr6	151802682	152108274
ESR1_chr6_151802682_152108274	0/0	c0008	1788	6	1	1	4	0	0	copy fasta	ESR1	chr6	151802682	152108274
ESR1_chr6_151802682_152108274	0/0	c0009	1788	4	0	0	4	0	0	copy fasta	ESR1	chr6	151802682	152108274
ESR1_chr6_151802682_152108274	0/0	c0010	1788	3	0	1	0	2	0	copy fasta	ESR1	chr6	151802682	152108274
ESR1_chr6_151802682_152108274	1/0	c0011	1788	3	0	1	0	1	0	copy fasta	ESR1	chr6	151802682	152108274
ESR1_chr6_151802682_152108274	0/0	c0012	1788	1	1	0	0	0	0	copy fasta	ESR1	chr6	151802682	152108274
ESR1_chr6_151802682_152108274	0/0	c0013	1788	1	0	1	0	0	0	copy fasta	ESR1	chr6	151802682	152108274
ESR1_chr6_151802682_152108274	0/0	c0014	1788	1	0	1	0	0	0	copy fasta	ESR1	chr6	151802682	152108274
ESR1_chr6_151802682_152108274	0/0	c0015	1788	1	1	0	0	0	0	copy fasta	ESR1	chr6	151802682	152108274
ESR1_chr6_151802682_152108274	0/0	c0016	1788	1	0	1	0	0	0	copy fasta	ESR1	chr6	151802682	152108274
ESR1_chr6_151802682_152108274	0/0	c0017	1788	1	0	0	0	0	1	copy fasta	ESR1	chr6	151802682	152108274
ESR1_chr6_151802682_152108274	0/0	c0018	1788	1	1	0	0	0	0	copy fasta	ESR1	chr6	151802682	152108274
ESR2_chr14_64223317_64299371	1/1	c0001	1593	288	63	68	110	14	31	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	c0002	1593	53	11	3	36	0	3	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	c0003	1593	10	0	0	10	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	c0004	1593	4	4	0	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	c0005	1593	2	0	0	2	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	c0006	1593	2	2	0	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	c0007	1593	1	0	0	0	0	1	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	c0008	1593	1	0	0	0	0	1	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	c0009	1593	1	1	0	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	c0010	1593	1	0	1	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	c0011	1593	1	0	0	1	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	c0012	1593	1	1	0	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	c0013	1593	1	0	0	1	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	c0014	1593	1	1	0	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESR2_chr14_64223317_64299371	0/0	c0015	1593	1	1	0	0	0	0	copy fasta	ESR2	chr14	64223317	64299371
ESRP1_chr8_94636174_94712466	1/0	c0001	2046	217	74	34	90	5	13	copy fasta	ESRP1	chr8	94636174	94712466
ESRP1_chr8_94636174_94712466	0/0	c0002	2046	88	2	8	65	0	13	copy fasta	ESRP1	chr8	94636174	94712466
ESRP1_chr8_94636174_94712466	0/1	c0003	2046	39	8	19	0	2	9	copy fasta	ESRP1	chr8	94636174	94712466
ESRP1_chr8_94636174_94712466	0/0	c0004	2046	16	1	7	0	2	6	copy fasta	ESRP1	chr8	94636174	94712466
ESRP1_chr8_94636174_94712466	0/0	c0005	2046	4	4	0	0	0	0	copy fasta	ESRP1	chr8	94636174	94712466
ESRP1_chr8_94636174_94712466	0/0	c0006	2046	2	2	0	0	0	0	copy fasta	ESRP1	chr8	94636174	94712466
ESRP1_chr8_94636174_94712466	0/0	c0007	2046	2	2	0	0	0	0	copy fasta	ESRP1	chr8	94636174	94712466
ESRP1_chr8_94636174_94712466	0/0	c0008	2046	1	0	0	1	0	0	copy fasta	ESRP1	chr8	94636174	94712466
ESRP1_chr8_94636174_94712466	0/0	c0009	2046	1	1	0	0	0	0	copy fasta	ESRP1	chr8	94636174	94712466
ESRP1_chr8_94636174_94712466	0/0	c0010	2046	1	1	0	0	0	0	copy fasta	ESRP1	chr8	94636174	94712466
ESRP1_chr8_94636174_94712466	0/0	c0011	2046	1	1	0	0	0	0	copy fasta	ESRP1	chr8	94636174	94712466
ESRP1_chr8_94636174_94712466	0/0	c0012	2046	1	0	0	0	0	1	copy fasta	ESRP1	chr8	94636174	94712466
ESRP1_chr8_94636174_94712466	0/0	c0013	2046	1	0	0	0	1	0	copy fasta	ESRP1	chr8	94636174	94712466
ESRP2_chr16_68224033_68241127	1/1	c0001	2154	248	76	55	77	8	30	copy fasta	ESRP2	chr16	68224033	68241127
ESRP2_chr16_68224033_68241127	0/0	c0002	2154	9	0	0	9	0	0	copy fasta	ESRP2	chr16	68224033	68241127
ESRP2_chr16_68224033_68241127	0/0	c0003	2154	5	5	0	0	0	0	copy fasta	ESRP2	chr16	68224033	68241127
ESRP2_chr16_68224033_68241127	0/0	c0004	2154	3	3	0	0	0	0	copy fasta	ESRP2	chr16	68224033	68241127
ESRP2_chr16_68224033_68241127	0/0	c0005	2154	2	0	0	2	0	0	copy fasta	ESRP2	chr16	68224033	68241127