JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ESRP2_chr16_68224033_68241127	0/0	c0006	2154	1	0	1	0	0	0	copy fasta	ESRP2	chr16	68224033	68241127
ESRP2_chr16_68224033_68241127	0/0	c0007	2154	1	1	0	0	0	0	copy fasta	ESRP2	chr16	68224033	68241127
ESRP2_chr16_68224033_68241127	0/0	c0008	2154	1	0	0	0	0	1	copy fasta	ESRP2	chr16	68224033	68241127
ESRP2_chr16_68224033_68241127	0/0	c0009	2154	1	0	0	0	0	1	copy fasta	ESRP2	chr16	68224033	68241127
ESRP2_chr16_68224033_68241127	0/0	c0010	2154	1	0	0	1	0	0	copy fasta	ESRP2	chr16	68224033	68241127
ESRP2_chr16_68224033_68241127	0/0	c0011	2154	1	0	0	1	0	0	copy fasta	ESRP2	chr16	68224033	68241127
ESRP2_chr16_68224033_68241127	0/0	c0012	2154	1	1	0	0	0	0	copy fasta	ESRP2	chr16	68224033	68241127
ESRRA_chr11_64300524_64321743	1/1	c0001	1272	351	90	57	150	11	41	copy fasta	ESRRA	chr11	64300524	64321743
ESRRA_chr11_64300524_64321743	0/0	c0002	1272	25	4	9	11	1	0	copy fasta	ESRRA	chr11	64300524	64321743
ESRRA_chr11_64300524_64321743	0/0	c0003	1272	4	0	4	0	0	0	copy fasta	ESRRA	chr11	64300524	64321743
ESRRA_chr11_64300524_64321743	0/0	c0004	1272	3	3	0	0	0	0	copy fasta	ESRRA	chr11	64300524	64321743
ESRRA_chr11_64300524_64321743	0/0	c0005	1233	1	0	0	0	0	1	copy fasta	ESRRA	chr11	64300524	64321743
ESRRA_chr11_64300524_64321743	0/0	c0006	1272	1	0	0	1	0	0	copy fasta	ESRRA	chr11	64300524	64321743
ESRRA_chr11_64300524_64321743	0/0	c0007	1272	1	0	0	1	0	0	copy fasta	ESRRA	chr11	64300524	64321743
ESRRA_chr11_64300524_64321743	0/0	c0008	1272	1	1	0	0	0	0	copy fasta	ESRRA	chr11	64300524	64321743
ESRRA_chr11_64300524_64321743	0/0	c0009	1272	1	0	0	1	0	0	copy fasta	ESRRA	chr11	64300524	64321743
ESRRB_chr14_76371137_76506837	0/1	c0001	1365	236	61	49	82	13	30	copy fasta	ESRRB	chr14	76371137	76506837
ESRRB_chr14_76371137_76506837	0/0	c0002	1365	39	14	3	19	1	2	copy fasta	ESRRB	chr14	76371137	76506837
ESRRB_chr14_76371137_76506837	0/0	c0003	1365	14	2	2	8	0	2	copy fasta	ESRRB	chr14	76371137	76506837
ESRRB_chr14_76371137_76506837	0/0	c0004	1365	7	1	1	5	0	0	copy fasta	ESRRB	chr14	76371137	76506837
ESRRB_chr14_76371137_76506837	0/0	c0005	1365	5	5	0	0	0	0	copy fasta	ESRRB	chr14	76371137	76506837
ESRRB_chr14_76371137_76506837	0/0	c0006	1365	4	0	0	4	0	0	copy fasta	ESRRB	chr14	76371137	76506837
ESRRB_chr14_76371137_76506837	0/0	c0007	1365	3	0	0	3	0	0	copy fasta	ESRRB	chr14	76371137	76506837
ESRRB_chr14_76371137_76506837	1/0	c0008	1365	3	2	0	0	0	0	copy fasta	ESRRB	chr14	76371137	76506837
ESRRB_chr14_76371137_76506837	0/0	c0009	1365	1	0	0	1	0	0	copy fasta	ESRRB	chr14	76371137	76506837
ESRRB_chr14_76371137_76506837	0/0	c0010	1365	1	0	0	1	0	0	copy fasta	ESRRB	chr14	76371137	76506837
ESRRB_chr14_76371137_76506837	0/0	c0011	1365	1	0	0	1	0	0	copy fasta	ESRRB	chr14	76371137	76506837
ESRRB_chr14_76371137_76506837	0/0	c0012	1365	1	0	0	1	0	0	copy fasta	ESRRB	chr14	76371137	76506837
ESRRB_chr14_76371137_76506837	0/0	c0013	1365	1	0	0	1	0	0	copy fasta	ESRRB	chr14	76371137	76506837
ESRRB_chr14_76371137_76506837	0/0	c0014	1365	1	1	0	0	0	0	copy fasta	ESRRB	chr14	76371137	76506837
ESRRB_chr14_76371137_76506837	0/0	c0015	1365	1	0	1	0	0	0	copy fasta	ESRRB	chr14	76371137	76506837
ESRRG_chr1_216498251_216728429	0/1	c0001	1377	143	23	28	74	2	15	copy fasta	ESRRG	chr1	216498251	216728429
ESRRG_chr1_216498251_216728429	1/0	c0002	1377	100	19	19	41	5	15	copy fasta	ESRRG	chr1	216498251	216728429
ESRRG_chr1_216498251_216728429	0/0	c0003	1377	29	27	1	0	1	0	copy fasta	ESRRG	chr1	216498251	216728429
ESRRG_chr1_216498251_216728429	0/0	c0004	1377	3	3	0	0	0	0	copy fasta	ESRRG	chr1	216498251	216728429
ESRRG_chr1_216498251_216728429	0/0	c0005	1377	3	3	0	0	0	0	copy fasta	ESRRG	chr1	216498251	216728429
ESRRG_chr1_216498251_216728429	0/0	c0006	1377	3	2	1	0	0	0	copy fasta	ESRRG	chr1	216498251	216728429
ESRRG_chr1_216498251_216728429	0/0	c0007	1377	3	3	0	0	0	0	copy fasta	ESRRG	chr1	216498251	216728429
ESRRG_chr1_216498251_216728429	0/0	c0008	1377	1	0	0	1	0	0	copy fasta	ESRRG	chr1	216498251	216728429
ESRRG_chr1_216498251_216728429	0/0	c0009	1377	1	0	1	0	0	0	copy fasta	ESRRG	chr1	216498251	216728429
ESS2_chr22_19125279_19149651	1/0	c0001	1431	233	46	46	106	9	25	copy fasta	ESS2	chr22	19125279	19149651
ESS2_chr22_19125279_19149651	0/1	c0002	1431	65	13	11	23	5	12	copy fasta	ESS2	chr22	19125279	19149651
ESS2_chr22_19125279_19149651	0/0	c0003	1431	53	20	9	18	1	5	copy fasta	ESS2	chr22	19125279	19149651
ESS2_chr22_19125279_19149651	0/0	c0004	1431	29	0	6	19	0	4	copy fasta	ESS2	chr22	19125279	19149651
ESS2_chr22_19125279_19149651	0/0	c0005	1431	27	5	1	17	2	2	copy fasta	ESS2	chr22	19125279	19149651
ESS2_chr22_19125279_19149651	0/0	c0006	1431	6	0	2	3	0	1	copy fasta	ESS2	chr22	19125279	19149651
ESS2_chr22_19125279_19149651	0/0	c0007	1431	5	5	0	0	0	0	copy fasta	ESS2	chr22	19125279	19149651
ESS2_chr22_19125279_19149651	0/0	c0008	1431	3	2	1	0	0	0	copy fasta	ESS2	chr22	19125279	19149651
ESS2_chr22_19125279_19149651	0/0	c0009	1431	2	1	0	1	0	0	copy fasta	ESS2	chr22	19125279	19149651
ESS2_chr22_19125279_19149651	0/0	c0010	1431	2	0	0	0	1	1	copy fasta	ESS2	chr22	19125279	19149651