JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ESS2_chr22_19125279_19149651	0/0	c0011	1431	1	1	0	0	0	0	copy fasta	ESS2	chr22	19125279	19149651
ESS2_chr22_19125279_19149651	0/0	c0012	1431	1	1	0	0	0	0	copy fasta	ESS2	chr22	19125279	19149651
ESS2_chr22_19125279_19149651	0/0	c0013	1431	1	0	0	1	0	0	copy fasta	ESS2	chr22	19125279	19149651
ESS2_chr22_19125279_19149651	0/0	c0014	1431	1	0	0	1	0	0	copy fasta	ESS2	chr22	19125279	19149651
ESS2_chr22_19125279_19149651	0/0	c0015	1431	1	0	0	1	0	0	copy fasta	ESS2	chr22	19125279	19149651
ESS2_chr22_19125279_19149651	0/0	c0016	1431	1	0	0	1	0	0	copy fasta	ESS2	chr22	19125279	19149651
ESS2_chr22_19125279_19149651	0/0	c0017	1431	1	0	0	1	0	0	copy fasta	ESS2	chr22	19125279	19149651
ESX1_chrX_104245038_104259933	0/0	c0001	1221	89	3	11	63	2	10	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	c0002	1248	76	29	13	24	0	10	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	c0003	1221	33	0	7	24	1	1	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	1/0	c0004	1221	32	16	5	5	4	1	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	c0005	1194	17	2	5	8	1	1	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	c0006	1248	10	3	2	1	3	1	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	c0007	1248	7	6	1	0	0	0	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	c0008	1221	5	0	4	1	0	0	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	c0009	1194	5	0	2	0	2	1	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	c0010	1194	3	0	0	3	0	0	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	c0011	1194	3	1	0	0	0	2	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	c0012	1248	3	3	0	0	0	0	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	c0013	1221	2	0	2	0	0	0	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	c0014	1275	2	2	0	0	0	0	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	c0015	1248	2	2	0	0	0	0	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	c0016	1221	1	0	0	1	0	0	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	c0017	1221	1	0	0	1	0	0	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	c0018	1221	1	0	0	1	0	0	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	c0019	1248	1	0	0	0	0	1	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	c0020	1221	1	0	0	1	0	0	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	c0021	1194	1	0	1	0	0	0	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	c0022	1248	1	1	0	0	0	0	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	c0023	1221	1	0	0	1	0	0	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/1	c0024	1194	1	0	0	0	0	0	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	c0025	1275	1	1	0	0	0	0	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	c0026	1194	1	0	1	0	0	0	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	c0027	1221	1	0	1	0	0	0	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	c0028	1194	1	0	1	0	0	0	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	c0029	1248	1	0	0	1	0	0	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	c0030	1221	1	1	0	0	0	0	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	c0031	1221	1	0	0	1	0	0	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	c0032	1194	1	0	0	0	0	1	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	c0033	1221	1	0	0	0	0	1	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	c0034	1248	1	1	0	0	0	0	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	c0035	1221	1	1	0	0	0	0	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	c0036	1221	1	0	1	0	0	0	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	c0037	1223	1	0	0	1	0	0	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	c0038	1196	1	0	0	1	0	0	copy fasta	ESX1	chrX	104245038	104259933
ESX1_chrX_104245038_104259933	0/0	c0039	1222	1	0	0	1	0	0	copy fasta	ESX1	chrX	104245038	104259933
ESYT1_chr12_56123267_56149674	1/1	c0001	3315	292	38	53	153	15	31	copy fasta	ESYT1	chr12	56123267	56149674
ESYT1_chr12_56123267_56149674	0/0	c0002	3315	38	33	3	0	2	0	copy fasta	ESYT1	chr12	56123267	56149674
ESYT1_chr12_56123267_56149674	0/0	c0003	3315	7	0	0	7	0	0	copy fasta	ESYT1	chr12	56123267	56149674
ESYT1_chr12_56123267_56149674	0/0	c0004	3315	7	7	0	0	0	0	copy fasta	ESYT1	chr12	56123267	56149674