JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ESYT1_chr12_56123267_56149674	0/0	c0005	3315	6	6	0	0	0	0	copy fasta	ESYT1	chr12	56123267	56149674
ESYT1_chr12_56123267_56149674	0/0	c0006	3315	3	0	3	0	0	0	copy fasta	ESYT1	chr12	56123267	56149674
ESYT1_chr12_56123267_56149674	0/0	c0007	3315	2	2	0	0	0	0	copy fasta	ESYT1	chr12	56123267	56149674
ESYT1_chr12_56123267_56149674	0/0	c0008	3315	1	1	0	0	0	0	copy fasta	ESYT1	chr12	56123267	56149674
ESYT1_chr12_56123267_56149674	0/0	c0009	3315	1	0	0	0	1	0	copy fasta	ESYT1	chr12	56123267	56149674
ESYT1_chr12_56123267_56149674	0/0	c0010	3315	1	0	0	1	0	0	copy fasta	ESYT1	chr12	56123267	56149674
ESYT1_chr12_56123267_56149674	0/0	c0011	3315	1	1	0	0	0	0	copy fasta	ESYT1	chr12	56123267	56149674
ESYT1_chr12_56123267_56149674	0/0	c0012	3315	1	0	0	0	0	1	copy fasta	ESYT1	chr12	56123267	56149674
ESYT1_chr12_56123267_56149674	0/0	c0013	3315	1	0	1	0	0	0	copy fasta	ESYT1	chr12	56123267	56149674
ESYT1_chr12_56123267_56149674	0/0	c0014	3315	1	0	0	1	0	0	copy fasta	ESYT1	chr12	56123267	56149674
ESYT1_chr12_56123267_56149674	0/0	c0015	3315	1	0	0	1	0	0	copy fasta	ESYT1	chr12	56123267	56149674
ESYT1_chr12_56123267_56149674	0/0	c0016	3315	1	0	1	0	0	0	copy fasta	ESYT1	chr12	56123267	56149674
ESYT1_chr12_56123267_56149674	0/0	c0017	3315	1	0	1	0	0	0	copy fasta	ESYT1	chr12	56123267	56149674
ESYT1_chr12_56123267_56149674	0/0	c0018	3315	1	0	0	1	0	0	copy fasta	ESYT1	chr12	56123267	56149674
ESYT1_chr12_56123267_56149674	0/0	c0019	3315	1	0	1	0	0	0	copy fasta	ESYT1	chr12	56123267	56149674
ESYT1_chr12_56123267_56149674	0/0	c0020	3315	1	0	0	1	0	0	copy fasta	ESYT1	chr12	56123267	56149674
ESYT1_chr12_56123267_56149674	0/0	c0021	3315	1	0	1	0	0	0	copy fasta	ESYT1	chr12	56123267	56149674
ESYT1_chr12_56123267_56149674	0/0	c0022	3315	1	0	0	1	0	0	copy fasta	ESYT1	chr12	56123267	56149674
ESYT2_chr7_158725997_158834509	1/0	c0001	2601	166	32	41	67	6	19	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	c0002	2601	92	22	10	51	2	7	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/1	c0003	2601	33	10	7	9	3	3	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	c0004	2601	21	0	0	21	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	c0005	2601	14	1	0	13	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	c0006	2601	5	4	0	1	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	c0007	2601	5	3	2	0	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	c0008	2601	4	4	0	0	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	c0009	2601	4	0	0	4	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	c0010	2601	4	4	0	0	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	c0011	2601	3	0	0	0	0	3	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	c0012	2601	2	0	1	0	1	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	c0013	2601	2	0	0	2	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	c0014	2601	2	2	0	0	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	c0015	2601	1	0	0	1	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	c0016	2601	1	0	1	0	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	c0017	2601	1	0	0	1	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	c0018	2601	1	0	0	1	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	c0019	2601	1	1	0	0	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	c0020	2601	1	0	0	1	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	c0021	2601	1	0	0	1	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	c0022	2601	1	1	0	0	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	c0023	2601	1	1	0	0	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	c0024	2601	1	1	0	0	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	c0025	2601	1	1	0	0	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	c0026	2601	1	0	0	1	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT2_chr7_158725997_158834509	0/0	c0027	2601	1	1	0	0	0	0	copy fasta	ESYT2	chr7	158725997	158834509
ESYT3_chr3_138429616_138484925	1/0	c0001	2661	108	43	29	10	8	17	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	c0002	2661	92	3	17	53	3	16	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/1	c0003	2661	78	12	2	54	0	9	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	c0004	2661	21	18	3	0	0	0	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	c0005	2661	9	7	2	0	0	0	copy fasta	ESYT3	chr3	138429616	138484925