JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ESYT3_chr3_138429616_138484925	0/0	c0006	2661	4	0	4	0	0	0	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	c0007	2661	3	0	0	3	0	0	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	c0008	2661	3	3	0	0	0	0	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	c0009	2661	2	2	0	0	0	0	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	c0010	2661	2	0	0	0	1	1	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	c0011	2661	1	1	0	0	0	0	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	c0012	2661	1	1	0	0	0	0	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	c0013	2661	1	1	0	0	0	0	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	c0014	2661	1	0	0	1	0	0	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	c0015	2661	1	0	0	0	0	1	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	c0016	2661	1	0	0	1	0	0	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	c0017	2661	1	0	0	1	0	0	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	c0018	2661	1	0	0	0	0	1	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	c0019	2661	1	1	0	0	0	0	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	c0020	2641	1	0	0	0	0	1	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	c0021	2661	1	0	1	0	0	0	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	c0022	2661	1	0	1	0	0	0	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	c0023	2661	1	0	0	1	0	0	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	c0024	2661	1	0	1	0	0	0	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	c0025	2661	1	1	0	0	0	0	copy fasta	ESYT3	chr3	138429616	138484925
ESYT3_chr3_138429616_138484925	0/0	c0026	2661	1	1	0	0	0	0	copy fasta	ESYT3	chr3	138429616	138484925
ETAA1_chr2_67392333_67417089	0/1	c0001	2781	165	20	32	84	8	20	copy fasta	ETAA1	chr2	67392333	67417089
ETAA1_chr2_67392333_67417089	1/0	c0002	2781	104	7	19	66	2	9	copy fasta	ETAA1	chr2	67392333	67417089
ETAA1_chr2_67392333_67417089	0/0	c0003	2781	58	25	7	9	5	12	copy fasta	ETAA1	chr2	67392333	67417089
ETAA1_chr2_67392333_67417089	0/0	c0004	2781	9	9	0	0	0	0	copy fasta	ETAA1	chr2	67392333	67417089
ETAA1_chr2_67392333_67417089	0/0	c0005	2781	7	0	0	7	0	0	copy fasta	ETAA1	chr2	67392333	67417089
ETAA1_chr2_67392333_67417089	0/0	c0006	2781	5	4	1	0	0	0	copy fasta	ETAA1	chr2	67392333	67417089
ETAA1_chr2_67392333_67417089	0/0	c0007	2781	5	5	0	0	0	0	copy fasta	ETAA1	chr2	67392333	67417089
ETAA1_chr2_67392333_67417089	0/0	c0008	2781	4	4	0	0	0	0	copy fasta	ETAA1	chr2	67392333	67417089
ETAA1_chr2_67392333_67417089	0/0	c0009	2781	3	0	2	0	0	1	copy fasta	ETAA1	chr2	67392333	67417089
ETAA1_chr2_67392333_67417089	0/0	c0010	2781	3	0	0	0	0	3	copy fasta	ETAA1	chr2	67392333	67417089
ETAA1_chr2_67392333_67417089	0/0	c0011	2781	3	3	0	0	0	0	copy fasta	ETAA1	chr2	67392333	67417089
ETAA1_chr2_67392333_67417089	0/0	c0012	2781	2	2	0	0	0	0	copy fasta	ETAA1	chr2	67392333	67417089
ETAA1_chr2_67392333_67417089	0/0	c0013	2781	2	2	0	0	0	0	copy fasta	ETAA1	chr2	67392333	67417089
ETAA1_chr2_67392333_67417089	0/0	c0014	2781	2	2	0	0	0	0	copy fasta	ETAA1	chr2	67392333	67417089
ETAA1_chr2_67392333_67417089	0/0	c0015	2781	2	1	1	0	0	0	copy fasta	ETAA1	chr2	67392333	67417089
ETAA1_chr2_67392333_67417089	0/0	c0016	2781	2	0	0	2	0	0	copy fasta	ETAA1	chr2	67392333	67417089
ETAA1_chr2_67392333_67417089	0/0	c0017	2781	2	2	0	0	0	0	copy fasta	ETAA1	chr2	67392333	67417089
ETAA1_chr2_67392333_67417089	0/0	c0018	2781	2	0	0	0	1	1	copy fasta	ETAA1	chr2	67392333	67417089
ETAA1_chr2_67392333_67417089	0/0	c0019	2781	2	1	1	0	0	0	copy fasta	ETAA1	chr2	67392333	67417089
ETAA1_chr2_67392333_67417089	0/0	c0020	2781	1	1	0	0	0	0	copy fasta	ETAA1	chr2	67392333	67417089
ETAA1_chr2_67392333_67417089	0/0	c0021	2781	1	0	1	0	0	0	copy fasta	ETAA1	chr2	67392333	67417089
ETAA1_chr2_67392333_67417089	0/0	c0022	2781	1	0	0	1	0	0	copy fasta	ETAA1	chr2	67392333	67417089
ETAA1_chr2_67392333_67417089	0/0	c0023	2781	1	0	0	1	0	0	copy fasta	ETAA1	chr2	67392333	67417089
ETAA1_chr2_67392333_67417089	0/0	c0024	2781	1	0	0	1	0	0	copy fasta	ETAA1	chr2	67392333	67417089
ETAA1_chr2_67392333_67417089	0/0	c0025	2781	1	0	0	0	0	1	copy fasta	ETAA1	chr2	67392333	67417089
ETAA1_chr2_67392333_67417089	0/0	c0026	2781	1	1	0	0	0	0	copy fasta	ETAA1	chr2	67392333	67417089
ETAA1_chr2_67392333_67417089	0/0	c0027	2781	1	0	0	0	0	1	copy fasta	ETAA1	chr2	67392333	67417089
ETAA1_chr2_67392333_67417089	0/0	c0028	2781	1	0	0	1	0	0	copy fasta	ETAA1	chr2	67392333	67417089
ETAA1_chr2_67392333_67417089	0/0	c0029	2781	1	0	0	1	0	0	copy fasta	ETAA1	chr2	67392333	67417089