JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ETAA1_chr2_67392333_67417089	0/0	c0030	2781	1	0	0	1	0	0	copy fasta	ETAA1	chr2	67392333	67417089
ETAA1_chr2_67392333_67417089	0/0	c0031	2781	1	1	0	0	0	0	copy fasta	ETAA1	chr2	67392333	67417089
ETDA_chrX_135247061_135258583	0/0	c0001	180	317	54	57	159	13	34	copy fasta	ETDA	chrX	135247061	135258583
ETDA_chrX_135247061_135258583	0/0	c0002	180	18	16	2	0	0	0	copy fasta	ETDA	chrX	135247061	135258583
ETDB_chrX_135113955_135125526	0/0	c0001	180	313	76	57	136	11	33	copy fasta	ETDB	chrX	135113955	135125526
ETDB_chrX_135113955_135125526	0/0	c0002	180	1	1	0	0	0	0	copy fasta	ETDB	chrX	135113955	135125526
ETDC_chrX_135304480_135314659	1/1	c0001	180	311	66	51	153	9	30	copy fasta	ETDC	chrX	135304480	135314659
ETF1_chr5_138501095_138548236	1/1	c0001	1314	331	87	69	120	12	41	copy fasta	ETF1	chr5	138501095	138548236
ETF1_chr5_138501095_138548236	0/0	c0002	1314	1	0	0	0	0	1	copy fasta	ETF1	chr5	138501095	138548236
ETF1_chr5_138501095_138548236	0/0	c0003	1314	1	1	0	0	0	0	copy fasta	ETF1	chr5	138501095	138548236
ETF1_chr5_138501095_138548236	0/0	c0004	1314	1	0	1	0	0	0	copy fasta	ETF1	chr5	138501095	138548236
ETFA_chr15_76210353_76316469	1/1	c0001	1002	319	90	58	124	11	34	copy fasta	ETFA	chr15	76210353	76316469
ETFA_chr15_76210353_76316469	0/0	c0002	1002	16	0	2	11	1	2	copy fasta	ETFA	chr15	76210353	76316469
ETFA_chr15_76210353_76316469	0/0	c0003	1002	1	0	0	1	0	0	copy fasta	ETFA	chr15	76210353	76316469
ETFBKMT_chr12_31654688_31678114	1/1	c0001	789	433	93	76	206	14	42	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	c0002	789	9	1	7	0	1	0	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	c0003	789	4	4	0	0	0	0	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	c0004	789	2	0	0	2	0	0	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	c0005	789	1	0	0	0	1	0	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	c0006	789	1	1	0	0	0	0	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	c0007	789	1	0	1	0	0	0	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFBKMT_chr12_31654688_31678114	0/0	c0008	789	1	1	0	0	0	0	copy fasta	ETFBKMT	chr12	31654688	31678114
ETFB_chr19_51340169_51371388	1/0	c0001	768	252	51	45	126	3	26	copy fasta	ETFB	chr19	51340169	51371388
ETFB_chr19_51340169_51371388	0/1	c0002	768	162	43	35	55	14	14	copy fasta	ETFB	chr19	51340169	51371388
ETFB_chr19_51340169_51371388	0/0	c0003	768	18	0	2	16	0	0	copy fasta	ETFB	chr19	51340169	51371388
ETFB_chr19_51340169_51371388	0/0	c0004	768	2	0	0	2	0	0	copy fasta	ETFB	chr19	51340169	51371388
ETFB_chr19_51340169_51371388	0/0	c0005	768	1	0	0	0	1	0	copy fasta	ETFB	chr19	51340169	51371388
ETFB_chr19_51340169_51371388	0/0	c0006	768	1	0	0	1	0	0	copy fasta	ETFB	chr19	51340169	51371388
ETFDH_chr4_158667296_158714623	0/1	c0001	1854	173	8	38	85	11	30	copy fasta	ETFDH	chr4	158667296	158714623
ETFDH_chr4_158667296_158714623	1/0	c0002	1854	123	81	15	13	3	10	copy fasta	ETFDH	chr4	158667296	158714623
ETFDH_chr4_158667296_158714623	0/0	c0003	1854	1	1	0	0	0	0	copy fasta	ETFDH	chr4	158667296	158714623
ETFDH_chr4_158667296_158714623	0/0	c0004	1854	1	0	1	0	0	0	copy fasta	ETFDH	chr4	158667296	158714623
ETFRF1_chr12_25190237_25210143	1/1	c0001	273	389	93	78	160	12	44	copy fasta	ETFRF1	chr12	25190237	25210143
ETFRF1_chr12_25190237_25210143	0/0	c0002	273	1	1	0	0	0	0	copy fasta	ETFRF1	chr12	25190237	25210143
ETHE1_chr19_43501719_43532201	1/1	c0001	765	333	65	69	143	12	42	copy fasta	ETHE1	chr19	43501719	43532201
ETHE1_chr19_43501719_43532201	0/0	c0002	765	60	16	8	28	2	6	copy fasta	ETHE1	chr19	43501719	43532201
ETHE1_chr19_43501719_43532201	0/0	c0003	765	14	13	1	0	0	0	copy fasta	ETHE1	chr19	43501719	43532201
ETHE1_chr19_43501719_43532201	0/0	c0004	765	1	0	0	1	0	0	copy fasta	ETHE1	chr19	43501719	43532201
ETNK1_chr12_22620171_22695665	1/1	c0001	1092	218	79	49	59	5	24	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	c0002	1092	82	9	7	57	2	7	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	c0003	1092	4	4	0	0	0	0	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	c0004	1092	4	0	0	4	0	0	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	c0005	1092	3	2	1	0	0	0	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	c0006	1092	3	0	0	0	1	2	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	c0007	1092	1	1	0	0	0	0	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	c0008	1092	1	1	0	0	0	0	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	c0009	1092	1	0	1	0	0	0	copy fasta	ETNK1	chr12	22620171	22695665
ETNK1_chr12_22620171_22695665	0/0	c0010	1092	1	0	0	0	0	1	copy fasta	ETNK1	chr12	22620171	22695665
ETNK2_chr1_204126062_204157044	1/1	c0001	1161	344	69	51	173	12	37	copy fasta	ETNK2	chr1	204126062	204157044
ETNK2_chr1_204126062_204157044	0/0	c0002	1161	41	14	9	13	2	3	copy fasta	ETNK2	chr1	204126062	204157044