JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ETNK2_chr1_204126062_204157044	0/0	c0003	1161	24	5	5	12	0	2	copy fasta	ETNK2	chr1	204126062	204157044
ETNK2_chr1_204126062_204157044	0/0	c0004	1161	6	6	0	0	0	0	copy fasta	ETNK2	chr1	204126062	204157044
ETNK2_chr1_204126062_204157044	0/0	c0005	1161	5	0	3	2	0	0	copy fasta	ETNK2	chr1	204126062	204157044
ETNK2_chr1_204126062_204157044	0/0	c0006	1161	1	1	0	0	0	0	copy fasta	ETNK2	chr1	204126062	204157044
ETNK2_chr1_204126062_204157044	0/0	c0007	1161	1	1	0	0	0	0	copy fasta	ETNK2	chr1	204126062	204157044
ETNPPL_chr4_108737053_108768053	1/1	c0001	1500	239	62	62	76	14	23	copy fasta	ETNPPL	chr4	108737053	108768053
ETNPPL_chr4_108737053_108768053	0/0	c0002	1500	124	14	8	85	0	17	copy fasta	ETNPPL	chr4	108737053	108768053
ETNPPL_chr4_108737053_108768053	0/0	c0003	1500	4	4	0	0	0	0	copy fasta	ETNPPL	chr4	108737053	108768053
ETNPPL_chr4_108737053_108768053	0/0	c0004	1500	2	2	0	0	0	0	copy fasta	ETNPPL	chr4	108737053	108768053
ETNPPL_chr4_108737053_108768053	0/0	c0005	1500	2	1	1	0	0	0	copy fasta	ETNPPL	chr4	108737053	108768053
ETNPPL_chr4_108737053_108768053	0/0	c0006	1500	2	0	0	0	0	2	copy fasta	ETNPPL	chr4	108737053	108768053
ETNPPL_chr4_108737053_108768053	0/0	c0007	1500	1	0	0	1	0	0	copy fasta	ETNPPL	chr4	108737053	108768053
ETNPPL_chr4_108737053_108768053	0/0	c0008	1500	1	1	0	0	0	0	copy fasta	ETNPPL	chr4	108737053	108768053
ETNPPL_chr4_108737053_108768053	0/0	c0009	1500	1	0	0	1	0	0	copy fasta	ETNPPL	chr4	108737053	108768053
ETNPPL_chr4_108737053_108768053	0/0	c0010	1500	1	0	0	1	0	0	copy fasta	ETNPPL	chr4	108737053	108768053
ETNPPL_chr4_108737053_108768053	0/0	c0011	1500	1	0	1	0	0	0	copy fasta	ETNPPL	chr4	108737053	108768053
ETS1_chr11_128453765_128592558	1/1	c0001	1458	146	43	33	49	5	14	copy fasta	ETS1	chr11	128453765	128592558
ETS1_chr11_128453765_128592558	0/0	c0002	1458	126	36	27	44	5	14	copy fasta	ETS1	chr11	128453765	128592558
ETS1_chr11_128453765_128592558	0/0	c0003	1458	6	0	1	0	2	3	copy fasta	ETS1	chr11	128453765	128592558
ETS1_chr11_128453765_128592558	0/0	c0004	1458	3	2	1	0	0	0	copy fasta	ETS1	chr11	128453765	128592558
ETS1_chr11_128453765_128592558	0/0	c0005	1458	2	2	0	0	0	0	copy fasta	ETS1	chr11	128453765	128592558
ETS1_chr11_128453765_128592558	0/0	c0006	1458	1	0	0	0	0	1	copy fasta	ETS1	chr11	128453765	128592558
ETS1_chr11_128453765_128592558	0/0	c0007	1458	1	0	0	1	0	0	copy fasta	ETS1	chr11	128453765	128592558
ETS1_chr11_128453765_128592558	0/0	c0008	1458	1	1	0	0	0	0	copy fasta	ETS1	chr11	128453765	128592558
ETS2_chr21_38800929_38829955	1/0	c0001	1410	208	49	37	98	2	21	copy fasta	ETS2	chr21	38800929	38829955
ETS2_chr21_38800929_38829955	0/1	c0002	1410	200	42	38	88	15	16	copy fasta	ETS2	chr21	38800929	38829955
ETS2_chr21_38800929_38829955	0/0	c0003	1410	7	0	2	0	1	4	copy fasta	ETS2	chr21	38800929	38829955
ETS2_chr21_38800929_38829955	0/0	c0004	1410	3	3	0	0	0	0	copy fasta	ETS2	chr21	38800929	38829955
ETS2_chr21_38800929_38829955	0/0	c0005	1410	1	1	0	0	0	0	copy fasta	ETS2	chr21	38800929	38829955
ETS2_chr21_38800929_38829955	0/0	c0006	1410	1	0	1	0	0	0	copy fasta	ETS2	chr21	38800929	38829955
ETS2_chr21_38800929_38829955	0/0	c0007	1410	1	0	0	1	0	0	copy fasta	ETS2	chr21	38800929	38829955
ETS2_chr21_38800929_38829955	0/0	c0008	1410	1	0	0	1	0	0	copy fasta	ETS2	chr21	38800929	38829955
ETS2_chr21_38800929_38829955	0/0	c0009	1410	1	1	0	0	0	0	copy fasta	ETS2	chr21	38800929	38829955
ETS2_chr21_38800929_38829955	0/0	c0010	1410	1	0	0	0	0	1	copy fasta	ETS2	chr21	38800929	38829955
ETS2_chr21_38800929_38829955	0/0	c0011	1410	1	1	0	0	0	0	copy fasta	ETS2	chr21	38800929	38829955
ETS2_chr21_38800929_38829955	0/0	c0012	1410	1	1	0	0	0	0	copy fasta	ETS2	chr21	38800929	38829955
ETV1_chr7_13886229_13994666	1/1	c0001	1434	216	62	41	79	11	21	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	c0002	1434	101	17	17	49	6	12	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	c0003	1434	1	0	0	0	1	0	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	c0004	1434	1	0	0	0	0	1	copy fasta	ETV1	chr7	13886229	13994666
ETV1_chr7_13886229_13994666	0/0	c0005	1434	1	1	0	0	0	0	copy fasta	ETV1	chr7	13886229	13994666
ETV2_chr19_35636745_35649871	1/1	c0001	1029	346	71	64	152	12	45	copy fasta	ETV2	chr19	35636745	35649871
ETV2_chr19_35636745_35649871	0/0	c0002	1029	65	12	16	31	4	2	copy fasta	ETV2	chr19	35636745	35649871
ETV2_chr19_35636745_35649871	0/0	c0003	1029	17	4	0	12	0	1	copy fasta	ETV2	chr19	35636745	35649871
ETV2_chr19_35636745_35649871	0/0	c0004	1029	2	2	0	0	0	0	copy fasta	ETV2	chr19	35636745	35649871
ETV2_chr19_35636745_35649871	0/0	c0005	1029	2	2	0	0	0	0	copy fasta	ETV2	chr19	35636745	35649871
ETV2_chr19_35636745_35649871	0/0	c0006	1029	1	1	0	0	0	0	copy fasta	ETV2	chr19	35636745	35649871
ETV2_chr19_35636745_35649871	0/0	c0007	1029	1	1	0	0	0	0	copy fasta	ETV2	chr19	35636745	35649871
ETV2_chr19_35636745_35649871	0/0	c0008	1029	1	1	0	0	0	0	copy fasta	ETV2	chr19	35636745	35649871
ETV2_chr19_35636745_35649871	0/0	c0009	1029	1	1	0	0	0	0	copy fasta	ETV2	chr19	35636745	35649871