JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ETV2_chr19_35636745_35649871	0/0	c0010	1029	1	1	0	0	0	0	copy fasta	ETV2	chr19	35636745	35649871
ETV2_chr19_35636745_35649871	0/0	c0011	1029	1	0	0	1	0	0	copy fasta	ETV2	chr19	35636745	35649871
ETV3L_chr1_157087043_157104808	1/0	c0001	1086	185	34	40	73	7	30	copy fasta	ETV3L	chr1	157087043	157104808
ETV3L_chr1_157087043_157104808	0/1	c0002	1086	54	8	9	31	3	2	copy fasta	ETV3L	chr1	157087043	157104808
ETV3L_chr1_157087043_157104808	0/0	c0003	1086	53	2	9	33	4	5	copy fasta	ETV3L	chr1	157087043	157104808
ETV3L_chr1_157087043_157104808	0/0	c0004	1086	41	25	4	7	0	5	copy fasta	ETV3L	chr1	157087043	157104808
ETV3L_chr1_157087043_157104808	0/0	c0005	1086	30	3	2	23	0	2	copy fasta	ETV3L	chr1	157087043	157104808
ETV3L_chr1_157087043_157104808	0/0	c0006	1086	27	2	7	17	0	1	copy fasta	ETV3L	chr1	157087043	157104808
ETV3L_chr1_157087043_157104808	0/0	c0007	1086	15	0	3	10	0	2	copy fasta	ETV3L	chr1	157087043	157104808
ETV3L_chr1_157087043_157104808	0/0	c0008	1086	13	0	1	9	1	2	copy fasta	ETV3L	chr1	157087043	157104808
ETV3L_chr1_157087043_157104808	0/0	c0009	1086	7	6	1	0	0	0	copy fasta	ETV3L	chr1	157087043	157104808
ETV3L_chr1_157087043_157104808	0/0	c0010	1086	6	2	0	4	0	0	copy fasta	ETV3L	chr1	157087043	157104808
ETV3L_chr1_157087043_157104808	0/0	c0011	1086	4	4	0	0	0	0	copy fasta	ETV3L	chr1	157087043	157104808
ETV3L_chr1_157087043_157104808	0/0	c0012	1086	4	0	2	0	1	1	copy fasta	ETV3L	chr1	157087043	157104808
ETV3L_chr1_157087043_157104808	0/0	c0013	1086	3	3	0	0	0	0	copy fasta	ETV3L	chr1	157087043	157104808
ETV3L_chr1_157087043_157104808	0/0	c0014	1086	3	1	1	0	1	0	copy fasta	ETV3L	chr1	157087043	157104808
ETV3L_chr1_157087043_157104808	0/0	c0015	1086	3	0	0	3	0	0	copy fasta	ETV3L	chr1	157087043	157104808
ETV3L_chr1_157087043_157104808	0/0	c0016	1086	2	2	0	0	0	0	copy fasta	ETV3L	chr1	157087043	157104808
ETV3L_chr1_157087043_157104808	0/0	c0017	1086	2	2	0	0	0	0	copy fasta	ETV3L	chr1	157087043	157104808
ETV3L_chr1_157087043_157104808	0/0	c0018	1086	2	0	2	0	0	0	copy fasta	ETV3L	chr1	157087043	157104808
ETV3L_chr1_157087043_157104808	0/0	c0019	1086	1	0	0	1	0	0	copy fasta	ETV3L	chr1	157087043	157104808
ETV3L_chr1_157087043_157104808	0/0	c0020	1086	1	1	0	0	0	0	copy fasta	ETV3L	chr1	157087043	157104808
ETV3L_chr1_157087043_157104808	0/0	c0021	1086	1	0	1	0	0	0	copy fasta	ETV3L	chr1	157087043	157104808
ETV3L_chr1_157087043_157104808	0/0	c0022	1086	1	1	0	0	0	0	copy fasta	ETV3L	chr1	157087043	157104808
ETV3L_chr1_157087043_157104808	0/0	c0023	1086	1	0	0	0	1	0	copy fasta	ETV3L	chr1	157087043	157104808
ETV3L_chr1_157087043_157104808	0/0	c0024	1086	1	0	0	1	0	0	copy fasta	ETV3L	chr1	157087043	157104808
ETV3L_chr1_157087043_157104808	0/0	c0025	1086	1	0	1	0	0	0	copy fasta	ETV3L	chr1	157087043	157104808
ETV3L_chr1_157087043_157104808	0/0	c0026	1086	1	0	1	0	0	0	copy fasta	ETV3L	chr1	157087043	157104808
ETV3L_chr1_157087043_157104808	0/0	c0027	1086	1	1	0	0	0	0	copy fasta	ETV3L	chr1	157087043	157104808
ETV3L_chr1_157087043_157104808	0/0	c0028	1086	1	1	0	0	0	0	copy fasta	ETV3L	chr1	157087043	157104808
ETV3_chr1_157116191_157143395	1/1	c0001	1539	292	77	55	120	10	28	copy fasta	ETV3	chr1	157116191	157143395
ETV3_chr1_157116191_157143395	0/0	c0002	1539	95	2	18	62	0	13	copy fasta	ETV3	chr1	157116191	157143395
ETV3_chr1_157116191_157143395	0/0	c0003	1539	10	10	0	0	0	0	copy fasta	ETV3	chr1	157116191	157143395
ETV3_chr1_157116191_157143395	0/0	c0004	1539	2	2	0	0	0	0	copy fasta	ETV3	chr1	157116191	157143395
ETV3_chr1_157116191_157143395	0/0	c0005	1539	1	0	0	1	0	0	copy fasta	ETV3	chr1	157116191	157143395
ETV3_chr1_157116191_157143395	0/0	c0006	1539	1	0	0	1	0	0	copy fasta	ETV3	chr1	157116191	157143395
ETV3_chr1_157116191_157143395	0/0	c0007	1539	1	0	1	0	0	0	copy fasta	ETV3	chr1	157116191	157143395
ETV3_chr1_157116191_157143395	0/0	c0008	1539	1	0	0	0	0	1	copy fasta	ETV3	chr1	157116191	157143395
ETV3_chr1_157116191_157143395	0/0	c0009	1539	1	1	0	0	0	0	copy fasta	ETV3	chr1	157116191	157143395
ETV4_chr17_43522846_43551340	1/1	c0001	1455	390	84	73	171	14	46	copy fasta	ETV4	chr17	43522846	43551340
ETV4_chr17_43522846_43551340	0/0	c0002	1455	4	4	0	0	0	0	copy fasta	ETV4	chr17	43522846	43551340
ETV4_chr17_43522846_43551340	0/0	c0003	1455	2	0	2	0	0	0	copy fasta	ETV4	chr17	43522846	43551340
ETV4_chr17_43522846_43551340	0/0	c0004	1455	1	0	1	0	0	0	copy fasta	ETV4	chr17	43522846	43551340
ETV4_chr17_43522846_43551340	0/0	c0005	1455	1	0	0	1	0	0	copy fasta	ETV4	chr17	43522846	43551340
ETV5_chr3_186041314_186114089	1/1	c0001	1533	330	81	56	153	12	26	copy fasta	ETV5	chr3	186041314	186114089
ETV5_chr3_186041314_186114089	0/0	c0002	1533	3	3	0	0	0	0	copy fasta	ETV5	chr3	186041314	186114089
ETV5_chr3_186041314_186114089	0/0	c0003	1533	2	1	1	0	0	0	copy fasta	ETV5	chr3	186041314	186114089
ETV5_chr3_186041314_186114089	0/0	c0004	1533	1	1	0	0	0	0	copy fasta	ETV5	chr3	186041314	186114089
ETV5_chr3_186041314_186114089	0/0	c0005	1533	1	0	1	0	0	0	copy fasta	ETV5	chr3	186041314	186114089
ETV5_chr3_186041314_186114089	0/0	c0006	1533	1	1	0	0	0	0	copy fasta	ETV5	chr3	186041314	186114089