Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADH7_chr4_99407263_99440342	0/0	c0013	1125	1	0	0	1	0	0	copy fasta	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	c0014	1125	1	0	0	1	0	0	copy fasta	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	c0015	1125	1	0	1	0	0	0	copy fasta	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	c0016	1125	1	1	0	0	0	0	copy fasta	ADH7	chr4	99407263	99440342
ADH7_chr4_99407263_99440342	0/0	c0017	1125	1	0	0	1	0	0	copy fasta	ADH7	chr4	99407263	99440342
ADHFE1_chr8_66427504_66473907	0/1	c0001	1404	189	45	44	80	2	17	copy fasta	ADHFE1	chr8	66427504	66473907
ADHFE1_chr8_66427504_66473907	1/0	c0002	1404	174	29	20	100	5	19	copy fasta	ADHFE1	chr8	66427504	66473907
ADHFE1_chr8_66427504_66473907	0/0	c0003	1404	35	17	9	0	3	6	copy fasta	ADHFE1	chr8	66427504	66473907
ADHFE1_chr8_66427504_66473907	0/0	c0004	1404	1	1	0	0	0	0	copy fasta	ADHFE1	chr8	66427504	66473907
ADHFE1_chr8_66427504_66473907	0/0	c0005	1404	1	1	0	0	0	0	copy fasta	ADHFE1	chr8	66427504	66473907
ADHFE1_chr8_66427504_66473907	0/0	c0006	1404	1	0	1	0	0	0	copy fasta	ADHFE1	chr8	66427504	66473907
ADHFE1_chr8_66427504_66473907	0/0	c0007	1404	1	1	0	0	0	0	copy fasta	ADHFE1	chr8	66427504	66473907
ADI1_chr2_3492366_3524531	0/0	c0001	540	219	80	34	82	5	18	copy fasta	ADI1	chr2	3492366	3524531
ADI1_chr2_3492366_3524531	1/1	c0002	540	152	13	32	76	9	20	copy fasta	ADI1	chr2	3492366	3524531
ADI1_chr2_3492366_3524531	0/0	c0003	540	11	0	0	11	0	0	copy fasta	ADI1	chr2	3492366	3524531
ADI1_chr2_3492366_3524531	0/0	c0004	540	3	0	0	3	0	0	copy fasta	ADI1	chr2	3492366	3524531
ADI1_chr2_3492366_3524531	0/0	c0005	540	2	0	2	0	0	0	copy fasta	ADI1	chr2	3492366	3524531
ADI1_chr2_3492366_3524531	0/0	c0006	540	2	0	0	2	0	0	copy fasta	ADI1	chr2	3492366	3524531
ADI1_chr2_3492366_3524531	0/0	c0007	540	1	0	0	1	0	0	copy fasta	ADI1	chr2	3492366	3524531
ADI1_chr2_3492366_3524531	0/0	c0008	540	1	1	0	0	0	0	copy fasta	ADI1	chr2	3492366	3524531
ADI1_chr2_3492366_3524531	0/0	c0009	540	1	0	0	1	0	0	copy fasta	ADI1	chr2	3492366	3524531
ADIG_chr20_38576197_38593463	1/1	c0001	243	359	81	60	160	14	42	copy fasta	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	c0002	243	10	10	0	0	0	0	copy fasta	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	c0003	243	2	2	0	0	0	0	copy fasta	ADIG	chr20	38576197	38593463
ADIG_chr20_38576197_38593463	0/0	c0004	243	1	1	0	0	0	0	copy fasta	ADIG	chr20	38576197	38593463
ADIPOQ_chr3_186837710_186863463	1/0	c0001	735	368	90	63	166	11	37	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/1	c0002	735	110	7	21	65	5	11	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	c0003	735	2	2	0	0	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	c0004	735	2	0	0	2	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	c0005	735	1	0	0	1	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOQ_chr3_186837710_186863463	0/0	c0006	735	1	1	0	0	0	0	copy fasta	ADIPOQ	chr3	186837710	186863463
ADIPOR1_chr1_202935832_202963312	1/1	c0001	1128	435	83	78	218	14	40	copy fasta	ADIPOR1	chr1	202935832	202963312
ADIPOR1_chr1_202935832_202963312	0/0	c0002	1128	4	4	0	0	0	0	copy fasta	ADIPOR1	chr1	202935832	202963312
ADIPOR1_chr1_202935832_202963312	0/0	c0003	1128	2	2	0	0	0	0	copy fasta	ADIPOR1	chr1	202935832	202963312
ADIPOR1_chr1_202935832_202963312	0/0	c0004	1128	1	1	0	0	0	0	copy fasta	ADIPOR1	chr1	202935832	202963312
ADIPOR2_chr12_1686070_1793674	1/1	c0001	1161	286	36	64	147	12	25	copy fasta	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	c0002	1161	42	18	4	16	1	3	copy fasta	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	c0003	1161	38	24	6	5	1	2	copy fasta	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	c0004	1161	5	5	0	0	0	0	copy fasta	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	c0005	1161	2	2	0	0	0	0	copy fasta	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	c0006	1161	2	0	0	0	0	2	copy fasta	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	c0007	1161	1	0	0	1	0	0	copy fasta	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	c0008	1161	1	1	0	0	0	0	copy fasta	ADIPOR2	chr12	1686070	1793674
ADIPOR2_chr12_1686070_1793674	0/0	c0009	1161	1	0	0	1	0	0	copy fasta	ADIPOR2	chr12	1686070	1793674
ADIRF_chr10_86963482_86975915	0/0	c0001	231	237	36	40	127	10	24	copy fasta	ADIRF	chr10	86963482	86975915
ADIRF_chr10_86963482_86975915	1/1	c0002	231	171	58	38	45	8	20	copy fasta	ADIRF	chr10	86963482	86975915
ADISSP_chr20_3748508_3772753	1/1	c0001	525	434	97	80	190	18	47	copy fasta	ADISSP	chr20	3748508	3772753
ADISSP_chr20_3748508_3772753	0/0	c0002	525	5	0	0	5	0	0	copy fasta	ADISSP	chr20	3748508	3772753
ADISSP_chr20_3748508_3772753	0/0	c0003	525	1	0	0	1	0	0	copy fasta	ADISSP	chr20	3748508	3772753
ADISSP_chr20_3748508_3772753	0/0	c0004	525	1	0	0	1	0	0	copy fasta	ADISSP	chr20	3748508	3772753