JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ETV5_chr3_186041314_186114089	0/0	c0007	1533	1	1	0	0	0	0	copy fasta	ETV5	chr3	186041314	186114089
ETV5_chr3_186041314_186114089	0/0	c0008	1533	1	0	0	1	0	0	copy fasta	ETV5	chr3	186041314	186114089
ETV6_chr12_11644674_11900377	1/1	c0001	1359	200	55	43	75	6	19	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	c0002	1359	59	18	9	19	4	9	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	c0003	1359	2	0	0	2	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV6_chr12_11644674_11900377	0/0	c0004	1359	1	1	0	0	0	0	copy fasta	ETV6	chr12	11644674	11900377
ETV7_chr6_36361194_36392669	1/0	c0001	1026	244	48	51	102	11	31	copy fasta	ETV7	chr6	36361194	36392669
ETV7_chr6_36361194_36392669	0/0	c0002	1026	109	22	24	52	3	8	copy fasta	ETV7	chr6	36361194	36392669
ETV7_chr6_36361194_36392669	0/0	c0003	1026	40	8	1	25	1	5	copy fasta	ETV7	chr6	36361194	36392669
ETV7_chr6_36361194_36392669	0/0	c0004	1026	38	12	4	22	0	0	copy fasta	ETV7	chr6	36361194	36392669
ETV7_chr6_36361194_36392669	0/1	c0005	1026	6	1	4	0	0	0	copy fasta	ETV7	chr6	36361194	36392669
ETV7_chr6_36361194_36392669	0/0	c0006	1026	5	0	0	4	0	1	copy fasta	ETV7	chr6	36361194	36392669
ETV7_chr6_36361194_36392669	0/0	c0007	1026	4	4	0	0	0	0	copy fasta	ETV7	chr6	36361194	36392669
ETV7_chr6_36361194_36392669	0/0	c0008	1026	2	2	0	0	0	0	copy fasta	ETV7	chr6	36361194	36392669
ETV7_chr6_36361194_36392669	0/0	c0009	1026	2	0	0	2	0	0	copy fasta	ETV7	chr6	36361194	36392669
ETV7_chr6_36361194_36392669	0/0	c0010	1026	1	1	0	0	0	0	copy fasta	ETV7	chr6	36361194	36392669
ETV7_chr6_36361194_36392669	0/0	c0011	1026	1	0	0	1	0	0	copy fasta	ETV7	chr6	36361194	36392669
ETV7_chr6_36361194_36392669	0/0	c0012	1026	1	0	0	0	1	0	copy fasta	ETV7	chr6	36361194	36392669
ETV7_chr6_36361194_36392669	0/0	c0013	1026	1	1	0	0	0	0	copy fasta	ETV7	chr6	36361194	36392669
ETV7_chr6_36361194_36392669	0/0	c0014	1026	1	0	0	1	0	0	copy fasta	ETV7	chr6	36361194	36392669
ETV7_chr6_36361194_36392669	0/0	c0015	1026	1	0	0	0	0	1	copy fasta	ETV7	chr6	36361194	36392669
ETV7_chr6_36361194_36392669	0/0	c0016	1026	1	0	0	0	0	1	copy fasta	ETV7	chr6	36361194	36392669
ETV7_chr6_36361194_36392669	0/0	c0017	1026	1	0	1	0	0	0	copy fasta	ETV7	chr6	36361194	36392669
ETV7_chr6_36361194_36392669	0/0	c0018	1026	1	0	0	1	0	0	copy fasta	ETV7	chr6	36361194	36392669
ETV7_chr6_36361194_36392669	0/0	c0019	1026	1	1	0	0	0	0	copy fasta	ETV7	chr6	36361194	36392669
ETV7_chr6_36361194_36392669	0/0	c0020	1026	1	0	0	0	0	1	copy fasta	ETV7	chr6	36361194	36392669
ETV7_chr6_36361194_36392669	0/0	c0021	1026	1	0	1	0	0	0	copy fasta	ETV7	chr6	36361194	36392669
EVA1A_chr2_75487318_75565939	1/1	c0001	459	304	49	59	148	13	33	copy fasta	EVA1A	chr2	75487318	75565939
EVA1A_chr2_75487318_75565939	0/0	c0002	459	63	33	10	12	4	4	copy fasta	EVA1A	chr2	75487318	75565939
EVA1A_chr2_75487318_75565939	0/0	c0003	450	17	12	1	0	1	3	copy fasta	EVA1A	chr2	75487318	75565939
EVA1B_chr1_36317030_36328645	1/1	c0001	498	398	96	84	155	15	46	copy fasta	EVA1B	chr1	36317030	36328645
EVA1B_chr1_36317030_36328645	0/0	c0002	498	3	0	0	3	0	0	copy fasta	EVA1B	chr1	36317030	36328645
EVA1B_chr1_36317030_36328645	0/0	c0003	498	1	0	1	0	0	0	copy fasta	EVA1B	chr1	36317030	36328645
EVA1B_chr1_36317030_36328645	0/0	c0004	498	1	0	0	0	1	0	copy fasta	EVA1B	chr1	36317030	36328645
EVA1B_chr1_36317030_36328645	0/0	c0005	498	1	0	1	0	0	0	copy fasta	EVA1B	chr1	36317030	36328645
EVA1B_chr1_36317030_36328645	0/0	c0006	498	1	1	0	0	0	0	copy fasta	EVA1B	chr1	36317030	36328645
EVA1B_chr1_36317030_36328645	0/0	c0007	498	1	1	0	0	0	0	copy fasta	EVA1B	chr1	36317030	36328645
EVA1C_chr21_32407706_32520387	0/1	c0001	1326	165	34	28	82	4	16	copy fasta	EVA1C	chr21	32407706	32520387
EVA1C_chr21_32407706_32520387	1/0	c0002	1326	108	27	23	36	7	14	copy fasta	EVA1C	chr21	32407706	32520387
EVA1C_chr21_32407706_32520387	0/0	c0003	1326	10	4	3	0	0	3	copy fasta	EVA1C	chr21	32407706	32520387
EVA1C_chr21_32407706_32520387	0/0	c0004	1326	8	0	1	7	0	0	copy fasta	EVA1C	chr21	32407706	32520387
EVA1C_chr21_32407706_32520387	0/0	c0005	1326	7	0	4	3	0	0	copy fasta	EVA1C	chr21	32407706	32520387
EVA1C_chr21_32407706_32520387	0/0	c0006	1326	6	0	2	4	0	0	copy fasta	EVA1C	chr21	32407706	32520387
EVA1C_chr21_32407706_32520387	0/0	c0007	1326	6	0	3	0	1	2	copy fasta	EVA1C	chr21	32407706	32520387
EVA1C_chr21_32407706_32520387	0/0	c0008	1326	5	4	1	0	0	0	copy fasta	EVA1C	chr21	32407706	32520387
EVA1C_chr21_32407706_32520387	0/0	c0009	1326	4	4	0	0	0	0	copy fasta	EVA1C	chr21	32407706	32520387
EVA1C_chr21_32407706_32520387	0/0	c0010	1326	4	4	0	0	0	0	copy fasta	EVA1C	chr21	32407706	32520387
EVA1C_chr21_32407706_32520387	0/0	c0011	1326	3	0	0	0	2	1	copy fasta	EVA1C	chr21	32407706	32520387
EVA1C_chr21_32407706_32520387	0/0	c0012	1326	3	2	1	0	0	0	copy fasta	EVA1C	chr21	32407706	32520387
EVA1C_chr21_32407706_32520387	0/0	c0013	1326	3	3	0	0	0	0	copy fasta	EVA1C	chr21	32407706	32520387