JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EVA1C_chr21_32407706_32520387	0/0	c0014	1326	2	0	0	2	0	0	copy fasta	EVA1C	chr21	32407706	32520387
EVA1C_chr21_32407706_32520387	0/0	c0015	1326	1	0	0	1	0	0	copy fasta	EVA1C	chr21	32407706	32520387
EVA1C_chr21_32407706_32520387	0/0	c0016	1326	1	0	1	0	0	0	copy fasta	EVA1C	chr21	32407706	32520387
EVA1C_chr21_32407706_32520387	0/0	c0017	1326	1	0	0	0	0	1	copy fasta	EVA1C	chr21	32407706	32520387
EVA1C_chr21_32407706_32520387	0/0	c0018	1326	1	1	0	0	0	0	copy fasta	EVA1C	chr21	32407706	32520387
EVA1C_chr21_32407706_32520387	0/0	c0019	1405	1	0	0	1	0	0	copy fasta	EVA1C	chr21	32407706	32520387
EVA1C_chr21_32407706_32520387	0/0	c0020	1326	1	0	0	0	0	1	copy fasta	EVA1C	chr21	32407706	32520387
EVA1C_chr21_32407706_32520387	0/0	c0021	1326	1	1	0	0	0	0	copy fasta	EVA1C	chr21	32407706	32520387
EVA1C_chr21_32407706_32520387	0/0	c0022	1326	1	1	0	0	0	0	copy fasta	EVA1C	chr21	32407706	32520387
EVA1C_chr21_32407706_32520387	0/0	c0023	1326	1	1	0	0	0	0	copy fasta	EVA1C	chr21	32407706	32520387
EVA1C_chr21_32407706_32520387	0/0	c0024	1326	1	1	0	0	0	0	copy fasta	EVA1C	chr21	32407706	32520387
EVA1C_chr21_32407706_32520387	0/0	c0025	1326	1	0	1	0	0	0	copy fasta	EVA1C	chr21	32407706	32520387
EVA1C_chr21_32407706_32520387	0/0	c0026	1326	1	1	0	0	0	0	copy fasta	EVA1C	chr21	32407706	32520387
EVC2_chr4_5557439_5713559	1/1	c0001	3927	36	0	10	13	4	7	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	c0002	3927	28	2	7	17	1	1	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	c0003	3927	18	0	7	6	1	4	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	c0004	3927	17	0	4	8	0	5	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	c0005	3927	15	1	7	5	2	0	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	c0006	3927	15	0	2	10	0	3	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	c0007	3927	12	12	0	0	0	0	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	c0008	3927	11	0	1	9	0	1	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	c0009	3927	10	0	5	4	0	1	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	c0010	3927	9	0	1	7	0	1	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	c0011	3927	8	2	5	0	0	1	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	c0012	3927	7	3	1	0	0	3	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	c0013	3927	6	4	1	0	0	1	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	c0014	3927	5	0	1	0	2	2	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	c0015	3927	5	4	1	0	0	0	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	c0016	3927	4	2	1	0	1	0	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	c0017	3927	3	3	0	0	0	0	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	c0018	3927	3	0	2	1	0	0	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	c0019	3927	3	1	0	2	0	0	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	c0020	3927	2	2	0	0	0	0	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	c0021	3927	2	0	0	2	0	0	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	c0022	3927	2	1	0	0	0	1	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	c0023	3927	2	0	2	0	0	0	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	c0024	3927	2	1	1	0	0	0	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	c0025	3927	2	0	0	0	1	1	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	c0026	3927	2	0	2	0	0	0	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	c0027	3927	2	2	0	0	0	0	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	c0028	3927	2	2	0	0	0	0	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	c0029	3927	2	2	0	0	0	0	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	c0030	3927	2	2	0	0	0	0	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	c0031	3927	1	1	0	0	0	0	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	c0032	3927	1	1	0	0	0	0	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	c0033	3927	1	0	0	1	0	0	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	c0034	3927	1	1	0	0	0	0	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	c0035	3927	1	1	0	0	0	0	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	c0036	3927	1	0	0	0	0	1	copy fasta	EVC2	chr4	5557439	5713559
EVC2_chr4_5557439_5713559	0/0	c0037	3927	1	0	1	0	0	0	copy fasta	EVC2	chr4	5557439	5713559