JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EVC_chr4_5706201_5819305	0/0	c0003	2979	31	2	11	12	2	4	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0004	2979	29	4	5	16	1	3	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0005	2979	24	3	2	19	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0006	2979	12	10	0	2	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0007	2979	11	0	0	7	0	4	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0008	2979	8	0	3	1	2	2	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0009	2979	7	2	5	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0010	2979	7	7	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0011	2979	7	0	4	3	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0012	2979	7	7	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0013	2979	6	0	2	4	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0014	2979	6	4	2	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0015	2979	5	0	1	3	0	1	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0016	2979	4	0	0	4	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0017	2979	4	0	0	4	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0018	2979	4	0	0	4	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0019	2979	4	1	0	2	0	1	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0020	2979	3	1	0	0	0	2	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0021	2979	3	0	0	3	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0022	2979	3	1	2	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0023	2979	3	0	0	0	1	2	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0024	2979	3	0	1	0	2	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0025	2979	3	0	0	3	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0026	2979	3	0	1	1	0	1	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0027	2979	2	0	0	0	0	2	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0028	2979	2	0	0	0	0	2	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0029	2979	2	2	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0030	2979	2	0	2	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0031	2979	2	0	2	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0032	2979	2	1	1	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0033	2979	2	2	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0034	2979	2	2	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0035	2979	2	2	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0036	2979	2	2	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0037	2979	2	1	0	0	0	1	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0038	2979	2	2	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0039	2979	2	0	0	0	2	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0040	2979	2	0	1	0	0	1	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0041	2979	2	0	0	0	0	2	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0042	2979	1	0	1	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0043	2979	1	0	0	0	0	1	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0044	2979	1	0	0	1	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0045	2979	1	0	0	1	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0046	2952	1	0	0	0	0	1	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	1/0	c0047	2979	1	0	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0048	2979	1	0	0	0	1	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0049	2979	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0050	2979	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0051	2979	1	0	0	0	0	1	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0052	2979	1	0	0	1	0	0	copy fasta	EVC	chr4	5706201	5819305