JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EVC_chr4_5706201_5819305	0/0	c0053	2979	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0054	2979	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0055	2979	1	0	0	1	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0056	2979	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0057	2979	1	0	0	1	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0058	2979	1	0	0	0	1	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0059	2979	1	0	0	1	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0060	2979	1	0	1	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0061	2979	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0062	2979	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0063	2979	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0064	2979	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0065	2979	1	0	0	1	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0066	2979	1	0	0	1	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0067	2979	1	0	0	0	0	1	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0068	2979	1	0	0	1	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0069	2979	1	0	0	1	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0070	2979	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0071	2979	1	0	1	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0072	2979	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0073	2979	1	0	1	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0074	2979	1	0	0	0	1	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0075	2979	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0076	2979	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0077	2979	1	0	0	1	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0078	2979	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0079	2979	1	0	0	1	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0080	2979	1	0	0	1	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0081	2979	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0082	2979	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0083	2979	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0084	2979	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0085	2979	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0086	2979	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0087	2979	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0088	2979	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0089	2979	1	0	0	0	0	1	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0090	2979	1	0	1	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0091	2979	1	0	0	1	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0092	2979	1	0	0	0	1	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0093	2979	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0094	2979	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0095	2979	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0096	2979	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0097	2979	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0098	2979	1	0	1	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0099	2979	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0100	2979	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0101	2979	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0102	2979	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305