JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EVC_chr4_5706201_5819305	0/0	c0103	2979	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0104	2979	1	0	1	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0105	2979	1	0	0	0	0	1	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0106	2979	1	0	1	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0107	2979	1	0	1	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0108	2979	1	0	0	0	0	1	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0109	2979	1	0	0	1	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0110	2979	1	0	0	1	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0111	2979	1	0	0	1	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0112	2979	1	0	0	1	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0113	2979	1	0	0	0	0	1	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0114	2979	1	0	0	1	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0115	2979	1	1	0	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0116	2979	1	0	0	1	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0117	2979	1	0	0	1	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0118	2979	1	0	0	1	0	0	copy fasta	EVC	chr4	5706201	5819305
EVC_chr4_5706201_5819305	0/0	c0119	2979	1	0	1	0	0	0	copy fasta	EVC	chr4	5706201	5819305
EVI2A_chr17_31311410_31326622	1/1	c0001	711	369	88	65	166	12	36	copy fasta	EVI2A	chr17	31311410	31326622
EVI2A_chr17_31311410_31326622	0/0	c0002	711	3	0	0	3	0	0	copy fasta	EVI2A	chr17	31311410	31326622
EVI2A_chr17_31311410_31326622	0/0	c0003	711	2	0	0	0	0	2	copy fasta	EVI2A	chr17	31311410	31326622
EVI2A_chr17_31311410_31326622	0/0	c0004	711	1	0	0	1	0	0	copy fasta	EVI2A	chr17	31311410	31326622
EVI2A_chr17_31311410_31326622	0/0	c0005	711	1	0	1	0	0	0	copy fasta	EVI2A	chr17	31311410	31326622
EVI2A_chr17_31311410_31326622	0/0	c0006	711	1	1	0	0	0	0	copy fasta	EVI2A	chr17	31311410	31326622
EVI2A_chr17_31311410_31326622	0/0	c0007	711	1	1	0	0	0	0	copy fasta	EVI2A	chr17	31311410	31326622
EVI2B_chr17_31298770_31319054	1/1	c0001	1347	360	80	55	179	12	32	copy fasta	EVI2B	chr17	31298770	31319054
EVI2B_chr17_31298770_31319054	0/0	c0002	1347	5	5	0	0	0	0	copy fasta	EVI2B	chr17	31298770	31319054
EVI2B_chr17_31298770_31319054	0/0	c0003	1347	2	2	0	0	0	0	copy fasta	EVI2B	chr17	31298770	31319054
EVI2B_chr17_31298770_31319054	0/0	c0004	1347	2	0	2	0	0	0	copy fasta	EVI2B	chr17	31298770	31319054
EVI2B_chr17_31298770_31319054	0/0	c0005	1347	1	0	1	0	0	0	copy fasta	EVI2B	chr17	31298770	31319054
EVI2B_chr17_31298770_31319054	0/0	c0006	1347	1	1	0	0	0	0	copy fasta	EVI2B	chr17	31298770	31319054
EVI2B_chr17_31298770_31319054	0/0	c0007	1347	1	0	0	1	0	0	copy fasta	EVI2B	chr17	31298770	31319054
EVI5L_chr19_7825218_7869976	0/0	c0001	2418	247	48	56	97	11	35	copy fasta	EVI5L	chr19	7825218	7869976
EVI5L_chr19_7825218_7869976	1/1	c0002	2418	96	25	11	46	5	7	copy fasta	EVI5L	chr19	7825218	7869976
EVI5L_chr19_7825218_7869976	0/0	c0003	2418	33	4	4	23	0	2	copy fasta	EVI5L	chr19	7825218	7869976
EVI5L_chr19_7825218_7869976	0/0	c0004	2418	9	3	3	3	0	0	copy fasta	EVI5L	chr19	7825218	7869976
EVI5L_chr19_7825218_7869976	0/0	c0005	2418	5	5	0	0	0	0	copy fasta	EVI5L	chr19	7825218	7869976
EVI5L_chr19_7825218_7869976	0/0	c0006	2418	3	3	0	0	0	0	copy fasta	EVI5L	chr19	7825218	7869976
EVI5L_chr19_7825218_7869976	0/0	c0007	2418	1	1	0	0	0	0	copy fasta	EVI5L	chr19	7825218	7869976
EVI5L_chr19_7825218_7869976	0/0	c0008	2418	1	0	0	1	0	0	copy fasta	EVI5L	chr19	7825218	7869976
EVI5L_chr19_7825218_7869976	0/0	c0009	2418	1	1	0	0	0	0	copy fasta	EVI5L	chr19	7825218	7869976
EVI5_chr1_92503696_92790108	0/1	c0001	2481	121	75	18	15	3	9	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	c0002	2481	30	4	12	6	1	7	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	1/0	c0003	2481	10	3	0	5	1	0	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	c0004	2481	4	0	2	0	2	0	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	c0005	2481	1	0	0	0	1	0	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	c0006	2481	1	0	0	1	0	0	copy fasta	EVI5	chr1	92503696	92790108
EVI5_chr1_92503696_92790108	0/0	c0007	2481	1	0	0	1	0	0	copy fasta	EVI5	chr1	92503696	92790108
EVL_chr14_100060422_100149236	1/1	c0001	1257	294	45	66	143	6	32	copy fasta	EVL	chr14	100060422	100149236
EVL_chr14_100060422_100149236	0/0	c0002	1257	36	29	3	2	0	2	copy fasta	EVL	chr14	100060422	100149236
EVL_chr14_100060422_100149236	0/0	c0003	1257	10	10	0	0	0	0	copy fasta	EVL	chr14	100060422	100149236