JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EVL_chr14_100060422_100149236	0/0	c0004	1257	5	5	0	0	0	0	copy fasta	EVL	chr14	100060422	100149236
EVL_chr14_100060422_100149236	0/0	c0005	1257	4	4	0	0	0	0	copy fasta	EVL	chr14	100060422	100149236
EVL_chr14_100060422_100149236	0/0	c0006	1257	3	3	0	0	0	0	copy fasta	EVL	chr14	100060422	100149236
EVL_chr14_100060422_100149236	0/0	c0007	1257	1	0	0	1	0	0	copy fasta	EVL	chr14	100060422	100149236
EVL_chr14_100060422_100149236	0/0	c0008	1257	1	0	1	0	0	0	copy fasta	EVL	chr14	100060422	100149236
EVPLL_chr17_18372778_18394647	1/1	c0001	906	195	15	34	116	5	23	copy fasta	EVPLL	chr17	18372778	18394647
EVPLL_chr17_18372778_18394647	0/0	c0002	906	127	51	17	45	3	11	copy fasta	EVPLL	chr17	18372778	18394647
EVPLL_chr17_18372778_18394647	0/0	c0003	906	69	18	29	9	6	7	copy fasta	EVPLL	chr17	18372778	18394647
EVPLL_chr17_18372778_18394647	0/0	c0004	906	7	7	0	0	0	0	copy fasta	EVPLL	chr17	18372778	18394647
EVPLL_chr17_18372778_18394647	0/0	c0005	906	6	6	0	0	0	0	copy fasta	EVPLL	chr17	18372778	18394647
EVPLL_chr17_18372778_18394647	0/0	c0006	906	1	1	0	0	0	0	copy fasta	EVPLL	chr17	18372778	18394647
EVPLL_chr17_18372778_18394647	0/0	c0007	906	1	1	0	0	0	0	copy fasta	EVPLL	chr17	18372778	18394647
EVPLL_chr17_18372778_18394647	0/0	c0008	906	1	1	0	0	0	0	copy fasta	EVPLL	chr17	18372778	18394647
EVPLL_chr17_18372778_18394647	0/0	c0009	906	1	0	0	0	0	1	copy fasta	EVPLL	chr17	18372778	18394647
EVPL_chr17_76001845_76032306	0/1	c0001	6102	149	4	23	93	6	22	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	1/0	c0002	6102	64	8	16	24	5	10	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0003	6102	39	13	14	1	2	9	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0004	6102	21	18	3	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0005	6102	19	4	3	11	0	1	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0006	6102	18	0	0	18	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0007	6102	11	9	2	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0008	6102	6	0	1	4	1	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0009	6102	5	5	0	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0010	6102	3	3	0	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0011	6102	3	3	0	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0012	6102	3	1	1	0	1	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0013	6102	3	3	0	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0014	6102	3	1	1	1	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0015	6102	2	2	0	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0016	6102	2	2	0	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0017	6102	2	0	2	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0018	6102	2	0	0	2	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0019	6102	2	2	0	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0020	6102	2	0	2	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0021	6102	2	0	0	2	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0022	6102	2	0	0	0	0	2	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0023	6102	2	0	0	2	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0024	6102	1	0	1	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0025	6102	1	0	0	1	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0026	6102	1	1	0	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0027	6102	1	1	0	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0028	6102	1	0	1	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0029	6102	1	0	0	1	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0030	6102	1	0	0	1	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0031	6102	1	1	0	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0032	6114	1	0	1	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0033	6102	1	1	0	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0034	6102	1	0	0	1	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0035	6102	1	1	0	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0036	6102	1	0	1	0	0	0	copy fasta	EVPL	chr17	76001845	76032306