JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EVPL_chr17_76001845_76032306	0/0	c0037	6102	1	0	0	0	0	1	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0038	6102	1	0	1	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0039	6102	1	0	0	0	0	1	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0040	6102	1	1	0	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0041	6102	1	1	0	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0042	6102	1	1	0	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0043	6102	1	0	1	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0044	6102	1	1	0	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0045	6102	1	1	0	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0046	6102	1	0	1	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0047	6102	1	1	0	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0048	6102	1	1	0	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0049	6102	1	0	0	1	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0050	6102	1	0	0	0	0	1	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0051	6102	1	0	0	1	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0052	6102	1	0	0	1	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0053	6102	1	0	0	1	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0054	6102	1	1	0	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0055	6102	1	1	0	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0056	6102	1	0	1	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0057	6102	1	0	0	1	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0058	6102	1	1	0	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0059	6102	1	0	0	0	1	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0060	6102	1	0	0	1	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0061	6102	1	1	0	0	0	0	copy fasta	EVPL	chr17	76001845	76032306
EVPL_chr17_76001845_76032306	0/0	c0062	6102	1	0	0	0	0	1	copy fasta	EVPL	chr17	76001845	76032306
EVX1_chr7_27237802_27252830	1/1	c0001	1224	381	84	70	183	10	32	copy fasta	EVX1	chr7	27237802	27252830
EVX1_chr7_27237802_27252830	0/0	c0002	1224	10	8	2	0	0	0	copy fasta	EVX1	chr7	27237802	27252830
EVX1_chr7_27237802_27252830	0/0	c0003	1224	4	4	0	0	0	0	copy fasta	EVX1	chr7	27237802	27252830
EVX1_chr7_27237802_27252830	0/0	c0004	1224	1	0	0	1	0	0	copy fasta	EVX1	chr7	27237802	27252830
EVX1_chr7_27237802_27252830	0/0	c0005	1224	1	1	0	0	0	0	copy fasta	EVX1	chr7	27237802	27252830
EVX1_chr7_27237802_27252830	0/0	c0006	1224	1	1	0	0	0	0	copy fasta	EVX1	chr7	27237802	27252830
EVX2_chr2_176072472_176088962	1/0	c0001	1431	211	40	51	90	11	18	copy fasta	EVX2	chr2	176072472	176088962
EVX2_chr2_176072472_176088962	0/1	c0002	1431	183	32	18	105	2	25	copy fasta	EVX2	chr2	176072472	176088962
EVX2_chr2_176072472_176088962	0/0	c0003	1431	9	9	0	0	0	0	copy fasta	EVX2	chr2	176072472	176088962
EVX2_chr2_176072472_176088962	0/0	c0004	1431	8	8	0	0	0	0	copy fasta	EVX2	chr2	176072472	176088962
EVX2_chr2_176072472_176088962	0/0	c0005	1428	4	0	0	4	0	0	copy fasta	EVX2	chr2	176072472	176088962
EVX2_chr2_176072472_176088962	0/0	c0006	1431	2	0	0	2	0	0	copy fasta	EVX2	chr2	176072472	176088962
EVX2_chr2_176072472_176088962	0/0	c0007	1431	2	0	0	2	0	0	copy fasta	EVX2	chr2	176072472	176088962
EVX2_chr2_176072472_176088962	0/0	c0008	1431	1	0	0	1	0	0	copy fasta	EVX2	chr2	176072472	176088962
EVX2_chr2_176072472_176088962	0/0	c0009	1431	1	1	0	0	0	0	copy fasta	EVX2	chr2	176072472	176088962
EVX2_chr2_176072472_176088962	0/0	c0010	1431	1	0	0	0	1	0	copy fasta	EVX2	chr2	176072472	176088962
EVX2_chr2_176072472_176088962	0/0	c0011	1431	1	1	0	0	0	0	copy fasta	EVX2	chr2	176072472	176088962
EVX2_chr2_176072472_176088962	0/0	c0012	1431	1	0	0	1	0	0	copy fasta	EVX2	chr2	176072472	176088962
EVX2_chr2_176072472_176088962	0/0	c0013	1431	1	0	0	1	0	0	copy fasta	EVX2	chr2	176072472	176088962
EVX2_chr2_176072472_176088962	0/0	c0014	1431	1	0	1	0	0	0	copy fasta	EVX2	chr2	176072472	176088962
EVX2_chr2_176072472_176088962	0/0	c0015	1431	1	1	0	0	0	0	copy fasta	EVX2	chr2	176072472	176088962
EVX2_chr2_176072472_176088962	0/0	c0016	1431	1	0	0	1	0	0	copy fasta	EVX2	chr2	176072472	176088962
EVX2_chr2_176072472_176088962	0/0	c0017	1431	1	0	0	0	0	1	copy fasta	EVX2	chr2	176072472	176088962
EVX2_chr2_176072472_176088962	0/0	c0018	1431	1	0	0	1	0	0	copy fasta	EVX2	chr2	176072472	176088962