JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EWSR1_chr22_29263268_29305521	1/0	c0001	1971	386	95	61	175	12	42	copy fasta	EWSR1	chr22	29263268	29305521
EWSR1_chr22_29263268_29305521	0/1	c0002	1971	1	0	0	0	0	0	copy fasta	EWSR1	chr22	29263268	29305521
EWSR1_chr22_29263268_29305521	0/0	c0003	1971	1	0	1	0	0	0	copy fasta	EWSR1	chr22	29263268	29305521
EWSR1_chr22_29263268_29305521	0/0	c0004	1971	1	1	0	0	0	0	copy fasta	EWSR1	chr22	29263268	29305521
EWSR1_chr22_29263268_29305521	0/0	c0005	1971	1	0	0	1	0	0	copy fasta	EWSR1	chr22	29263268	29305521
EXD1_chr15_41177728_41235757	0/0	c0001	1719	133	51	14	51	3	14	copy fasta	EXD1	chr15	41177728	41235757
EXD1_chr15_41177728_41235757	0/1	c0002	1719	122	19	32	56	1	13	copy fasta	EXD1	chr15	41177728	41235757
EXD1_chr15_41177728_41235757	0/0	c0003	1719	32	9	9	3	4	7	copy fasta	EXD1	chr15	41177728	41235757
EXD1_chr15_41177728_41235757	0/0	c0004	1719	8	6	2	0	0	0	copy fasta	EXD1	chr15	41177728	41235757
EXD1_chr15_41177728_41235757	0/0	c0005	1719	6	6	0	0	0	0	copy fasta	EXD1	chr15	41177728	41235757
EXD1_chr15_41177728_41235757	0/0	c0006	1719	3	0	1	0	2	0	copy fasta	EXD1	chr15	41177728	41235757
EXD1_chr15_41177728_41235757	0/0	c0007	1719	3	0	0	3	0	0	copy fasta	EXD1	chr15	41177728	41235757
EXD1_chr15_41177728_41235757	0/0	c0008	1719	2	0	0	2	0	0	copy fasta	EXD1	chr15	41177728	41235757
EXD1_chr15_41177728_41235757	0/0	c0009	1719	1	0	0	0	0	1	copy fasta	EXD1	chr15	41177728	41235757
EXD1_chr15_41177728_41235757	0/0	c0010	1719	1	0	0	1	0	0	copy fasta	EXD1	chr15	41177728	41235757
EXD1_chr15_41177728_41235757	0/0	c0011	1719	1	1	0	0	0	0	copy fasta	EXD1	chr15	41177728	41235757
EXD1_chr15_41177728_41235757	0/0	c0012	1719	1	0	0	1	0	0	copy fasta	EXD1	chr15	41177728	41235757
EXD1_chr15_41177728_41235757	0/0	c0013	1719	1	1	0	0	0	0	copy fasta	EXD1	chr15	41177728	41235757
EXD1_chr15_41177728_41235757	0/0	c0014	1719	1	1	0	0	0	0	copy fasta	EXD1	chr15	41177728	41235757
EXD1_chr15_41177728_41235757	1/0	c0015	1719	1	0	0	0	0	0	copy fasta	EXD1	chr15	41177728	41235757
EXD1_chr15_41177728_41235757	0/0	c0016	1719	1	0	0	1	0	0	copy fasta	EXD1	chr15	41177728	41235757
EXD1_chr15_41177728_41235757	0/0	c0017	1719	1	0	0	0	0	1	copy fasta	EXD1	chr15	41177728	41235757
EXD2_chr14_69186498_69249018	0/0	c0001	1866	101	53	21	5	5	17	copy fasta	EXD2	chr14	69186498	69249018
EXD2_chr14_69186498_69249018	1/0	c0002	1866	64	25	16	9	5	8	copy fasta	EXD2	chr14	69186498	69249018
EXD2_chr14_69186498_69249018	0/1	c0003	1866	59	9	15	17	3	14	copy fasta	EXD2	chr14	69186498	69249018
EXD2_chr14_69186498_69249018	0/0	c0004	1866	5	3	2	0	0	0	copy fasta	EXD2	chr14	69186498	69249018
EXD2_chr14_69186498_69249018	0/0	c0005	1866	1	0	0	1	0	0	copy fasta	EXD2	chr14	69186498	69249018
EXD2_chr14_69186498_69249018	0/0	c0006	1866	1	0	0	0	1	0	copy fasta	EXD2	chr14	69186498	69249018
EXD2_chr14_69186498_69249018	0/0	c0007	1866	1	1	0	0	0	0	copy fasta	EXD2	chr14	69186498	69249018
EXD2_chr14_69186498_69249018	0/0	c0008	1866	1	1	0	0	0	0	copy fasta	EXD2	chr14	69186498	69249018
EXD2_chr14_69186498_69249018	0/0	c0009	1866	1	0	0	0	0	1	copy fasta	EXD2	chr14	69186498	69249018
EXD3_chr9_137301896_137428162	0/0	c0001	2631	19	0	3	10	1	5	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/1	c0002	2631	13	6	2	1	0	3	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	c0003	2631	5	0	1	2	2	0	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	1/0	c0004	2631	4	2	1	0	0	0	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	c0005	2631	3	3	0	0	0	0	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	c0006	2631	2	2	0	0	0	0	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	c0007	2631	2	2	0	0	0	0	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	c0008	2631	2	0	1	0	0	1	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	c0009	2631	2	2	0	0	0	0	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	c0010	2631	2	0	1	0	1	0	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	c0011	2631	2	0	0	1	0	1	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	c0012	2631	2	2	0	0	0	0	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	c0013	2631	1	1	0	0	0	0	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	c0014	2631	1	0	0	0	0	1	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	c0015	2631	1	0	1	0	0	0	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	c0016	2631	1	0	1	0	0	0	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	c0017	2631	1	1	0	0	0	0	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	c0018	2631	1	1	0	0	0	0	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	c0019	2631	1	1	0	0	0	0	copy fasta	EXD3	chr9	137301896	137428162