JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EXD3_chr9_137301896_137428162	0/0	c0020	2631	1	1	0	0	0	0	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	c0021	2631	1	0	0	0	0	1	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	c0022	2631	1	1	0	0	0	0	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	c0023	2631	1	1	0	0	0	0	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	c0024	2631	1	1	0	0	0	0	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	c0025	2631	1	0	1	0	0	0	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	c0026	2631	1	0	0	1	0	0	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	c0027	2631	1	0	0	1	0	0	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	c0028	2631	1	0	0	0	1	0	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	c0029	2631	1	1	0	0	0	0	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	c0030	2631	1	1	0	0	0	0	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	c0031	2631	1	0	0	0	1	0	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	c0032	2631	1	0	1	0	0	0	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	c0033	2631	1	0	1	0	0	0	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	c0034	2631	1	1	0	0	0	0	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	c0035	2631	1	1	0	0	0	0	copy fasta	EXD3	chr9	137301896	137428162
EXD3_chr9_137301896_137428162	0/0	c0036	2631	1	1	0	0	0	0	copy fasta	EXD3	chr9	137301896	137428162
EXO1_chr1_241843204_241894939	0/0	c0001	2541	67	10	4	50	1	2	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	c0002	2541	51	12	7	24	2	6	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	c0003	2541	25	0	16	6	1	2	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	c0004	2541	22	0	4	17	1	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	c0005	2541	21	7	7	1	1	5	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	c0006	2541	21	3	9	6	2	1	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	c0007	2541	18	9	3	2	4	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	c0008	2541	17	0	0	16	0	1	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	c0009	2541	16	8	1	6	0	1	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	c0010	2541	15	2	5	6	0	2	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	c0011	2541	15	10	3	2	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	c0012	2541	12	0	6	0	3	3	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	c0013	2541	12	0	5	7	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	1/0	c0014	2541	10	9	0	0	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	c0015	2541	10	4	1	5	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	c0016	2541	8	0	1	6	0	1	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	c0017	2541	8	2	0	0	0	6	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	c0018	2541	7	0	0	5	0	2	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	c0019	2541	6	0	0	5	0	1	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	c0020	2541	6	0	0	3	1	2	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	c0021	2541	5	0	0	5	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	c0022	2541	3	3	0	0	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/1	c0023	2541	3	0	0	0	0	2	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	c0024	2541	3	0	0	2	1	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	c0025	2541	2	0	2	0	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	c0026	2541	2	0	2	0	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	c0027	2541	2	2	0	0	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	c0028	2541	2	0	1	0	1	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	c0029	2541	2	2	0	0	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	c0030	2541	1	1	0	0	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	c0031	2541	1	0	0	0	0	1	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	c0032	2541	1	0	0	0	0	1	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	c0033	2541	1	0	0	0	0	1	copy fasta	EXO1	chr1	241843204	241894939