Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADISSP_chr20_3748508_3772753	0/0	c0005	525	1	0	0	0	0	1	copy fasta	ADISSP	chr20	3748508	3772753
ADISSP_chr20_3748508_3772753	0/0	c0006	525	1	0	0	1	0	0	copy fasta	ADISSP	chr20	3748508	3772753
ADISSP_chr20_3748508_3772753	0/0	c0007	525	1	0	0	1	0	0	copy fasta	ADISSP	chr20	3748508	3772753
ADISSP_chr20_3748508_3772753	0/0	c0008	525	1	1	0	0	0	0	copy fasta	ADISSP	chr20	3748508	3772753
ADISSP_chr20_3748508_3772753	0/0	c0009	525	1	0	0	1	0	0	copy fasta	ADISSP	chr20	3748508	3772753
ADK_chr10_74146221_74714290	1/1	c0001	1089	190	68	38	61	4	17	copy fasta	ADK	chr10	74146221	74714290
ADK_chr10_74146221_74714290	0/0	c0002	1089	8	7	0	0	0	1	copy fasta	ADK	chr10	74146221	74714290
ADK_chr10_74146221_74714290	0/0	c0003	1089	1	0	0	1	0	0	copy fasta	ADK	chr10	74146221	74714290
ADK_chr10_74146221_74714290	0/0	c0004	1089	1	1	0	0	0	0	copy fasta	ADK	chr10	74146221	74714290
ADM2_chr22_50476543_50491437	1/1	c0001	447	366	86	69	149	16	44	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	c0002	429	72	13	13	40	2	4	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	c0003	447	2	0	0	1	0	1	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	c0004	447	1	0	0	1	0	0	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	c0005	429	1	0	0	0	0	1	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	c0006	432	1	0	0	1	0	0	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	c0007	447	1	1	0	0	0	0	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	c0008	430	1	0	0	1	0	0	copy fasta	ADM2	chr22	50476543	50491437
ADM2_chr22_50476543_50491437	0/0	c0009	429	1	0	0	1	0	0	copy fasta	ADM2	chr22	50476543	50491437
ADM5_chr19_49684594_49695575	1/1	c0001	462	373	85	74	152	14	46	copy fasta	ADM5	chr19	49684594	49695575
ADM5_chr19_49684594_49695575	0/0	c0002	462	10	7	3	0	0	0	copy fasta	ADM5	chr19	49684594	49695575
ADM5_chr19_49684594_49695575	0/0	c0003	462	4	0	0	4	0	0	copy fasta	ADM5	chr19	49684594	49695575
ADM5_chr19_49684594_49695575	0/0	c0004	462	2	0	0	0	0	2	copy fasta	ADM5	chr19	49684594	49695575
ADM5_chr19_49684594_49695575	0/0	c0005	462	2	0	1	0	0	1	copy fasta	ADM5	chr19	49684594	49695575
ADM5_chr19_49684594_49695575	0/0	c0006	462	1	0	0	0	0	1	copy fasta	ADM5	chr19	49684594	49695575
ADM_chr11_10300073_10312397	1/1	c0001	558	390	80	67	182	17	42	copy fasta	ADM	chr11	10300073	10312397
ADM_chr11_10300073_10312397	0/0	c0002	558	14	10	3	0	1	0	copy fasta	ADM	chr11	10300073	10312397
ADM_chr11_10300073_10312397	0/0	c0003	558	3	3	0	0	0	0	copy fasta	ADM	chr11	10300073	10312397
ADM_chr11_10300073_10312397	0/0	c0004	558	1	1	0	0	0	0	copy fasta	ADM	chr11	10300073	10312397
ADNP2_chr18_80104262_80145346	1/1	c0001	3396	155	41	26	64	6	16	copy fasta	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	c0002	3396	105	13	16	66	1	9	copy fasta	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	c0003	3396	46	5	13	21	3	4	copy fasta	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	c0004	3396	39	12	7	9	1	10	copy fasta	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	c0005	3396	11	9	2	0	0	0	copy fasta	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	c0006	3396	6	1	3	1	0	1	copy fasta	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	c0007	3396	4	0	0	4	0	0	copy fasta	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	c0008	3396	3	0	2	0	0	1	copy fasta	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	c0009	3396	3	0	0	3	0	0	copy fasta	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	c0010	3396	2	0	2	0	0	0	copy fasta	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	c0011	3396	1	0	0	0	1	0	copy fasta	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	c0012	3361	1	0	1	0	0	0	copy fasta	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	c0013	3396	1	0	0	0	0	1	copy fasta	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	c0014	3396	1	1	0	0	0	0	copy fasta	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	c0015	3396	1	0	0	1	0	0	copy fasta	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	c0016	3396	1	0	0	1	0	0	copy fasta	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	c0017	3396	1	0	0	1	0	0	copy fasta	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	c0018	3396	1	0	0	1	0	0	copy fasta	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	c0019	3396	1	1	0	0	0	0	copy fasta	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	c0020	3396	1	1	0	0	0	0	copy fasta	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	c0021	3396	1	1	0	0	0	0	copy fasta	ADNP2	chr18	80104262	80145346
ADNP2_chr18_80104262_80145346	0/0	c0022	3396	1	1	0	0	0	0	copy fasta	ADNP2	chr18	80104262	80145346