JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EXO1_chr1_241843204_241894939	0/0	c0034	2541	1	0	0	0	0	1	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	c0035	2541	1	1	0	0	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	c0036	2541	1	0	0	1	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	c0037	2541	1	0	1	0	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	c0038	2541	1	0	0	1	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	c0039	2541	1	1	0	0	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	c0040	2541	1	0	1	0	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	c0041	2541	1	1	0	0	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	c0042	2541	1	0	0	1	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	c0043	2541	1	0	1	0	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	c0044	2541	1	1	0	0	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	c0045	2541	1	1	0	0	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	c0046	2541	1	0	0	0	0	1	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	c0047	2541	1	0	0	1	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	c0048	2541	1	1	0	0	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	c0049	2541	1	0	0	0	0	1	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	c0050	2541	1	1	0	0	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	c0051	2541	1	0	0	0	0	1	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	c0052	2541	1	1	0	0	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	c0053	2541	1	1	0	0	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO1_chr1_241843204_241894939	0/0	c0054	2541	1	1	0	0	0	0	copy fasta	EXO1	chr1	241843204	241894939
EXO5_chr1_40503767_40521038	0/0	c0000	0	1	0	0	1	0	0	copy fasta	EXO5	chr1	40503767	40521038
EXO5_chr1_40503767_40521038	1/0	c0001	1122	165	29	30	84	8	13	copy fasta	EXO5	chr1	40503767	40521038
EXO5_chr1_40503767_40521038	0/0	c0002	1122	152	48	17	68	5	14	copy fasta	EXO5	chr1	40503767	40521038
EXO5_chr1_40503767_40521038	0/1	c0003	1122	30	5	9	3	3	9	copy fasta	EXO5	chr1	40503767	40521038
EXO5_chr1_40503767_40521038	0/0	c0004	1120	18	0	0	18	0	0	copy fasta	EXO5	chr1	40503767	40521038
EXO5_chr1_40503767_40521038	0/0	c0005	1122	17	0	15	2	0	0	copy fasta	EXO5	chr1	40503767	40521038
EXO5_chr1_40503767_40521038	0/0	c0006	1122	12	2	1	7	0	2	copy fasta	EXO5	chr1	40503767	40521038
EXO5_chr1_40503767_40521038	0/0	c0007	1122	5	5	0	0	0	0	copy fasta	EXO5	chr1	40503767	40521038
EXO5_chr1_40503767_40521038	0/0	c0008	1122	2	0	2	0	0	0	copy fasta	EXO5	chr1	40503767	40521038
EXO5_chr1_40503767_40521038	0/0	c0009	1122	1	1	0	0	0	0	copy fasta	EXO5	chr1	40503767	40521038
EXO5_chr1_40503767_40521038	0/0	c0010	1122	1	0	0	1	0	0	copy fasta	EXO5	chr1	40503767	40521038
EXO5_chr1_40503767_40521038	0/0	c0011	1122	1	0	1	0	0	0	copy fasta	EXO5	chr1	40503767	40521038
EXO5_chr1_40503767_40521038	0/0	c0012	1122	1	0	1	0	0	0	copy fasta	EXO5	chr1	40503767	40521038
EXOC1L_chr4_55814790_55842489	1/1	c0001	519	394	92	78	171	12	39	copy fasta	EXOC1L	chr4	55814790	55842489
EXOC1L_chr4_55814790_55842489	0/0	c0002	519	8	4	2	0	0	2	copy fasta	EXOC1L	chr4	55814790	55842489
EXOC1L_chr4_55814790_55842489	0/0	c0003	519	1	0	0	0	0	1	copy fasta	EXOC1L	chr4	55814790	55842489
EXOC1L_chr4_55814790_55842489	0/0	c0004	519	1	0	0	1	0	0	copy fasta	EXOC1L	chr4	55814790	55842489
EXOC1_chr4_55848648_55910086	1/1	c0001	2685	255	68	48	99	8	30	copy fasta	EXOC1	chr4	55848648	55910086
EXOC1_chr4_55848648_55910086	0/0	c0002	2685	106	18	15	63	2	8	copy fasta	EXOC1	chr4	55848648	55910086
EXOC1_chr4_55848648_55910086	0/0	c0003	2685	7	0	7	0	0	0	copy fasta	EXOC1	chr4	55848648	55910086
EXOC1_chr4_55848648_55910086	0/0	c0004	2685	2	2	0	0	0	0	copy fasta	EXOC1	chr4	55848648	55910086
EXOC1_chr4_55848648_55910086	0/0	c0005	2685	2	0	0	0	0	2	copy fasta	EXOC1	chr4	55848648	55910086
EXOC1_chr4_55848648_55910086	0/0	c0006	2685	1	0	0	1	0	0	copy fasta	EXOC1	chr4	55848648	55910086
EXOC1_chr4_55848648_55910086	0/0	c0007	2685	1	0	1	0	0	0	copy fasta	EXOC1	chr4	55848648	55910086
EXOC1_chr4_55848648_55910086	0/0	c0008	2685	1	0	0	1	0	0	copy fasta	EXOC1	chr4	55848648	55910086
EXOC1_chr4_55848648_55910086	0/0	c0009	2685	1	0	1	0	0	0	copy fasta	EXOC1	chr4	55848648	55910086
EXOC2_chr6_480154_698139	1/1	c0001	2775	162	44	30	52	11	23	copy fasta	EXOC2	chr6	480154	698139
EXOC2_chr6_480154_698139	0/0	c0002	2775	39	4	2	32	0	1	copy fasta	EXOC2	chr6	480154	698139
EXOC2_chr6_480154_698139	0/0	c0003	2775	28	15	1	5	1	6	copy fasta	EXOC2	chr6	480154	698139