JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EXOC2_chr6_480154_698139	0/0	c0004	2775	13	2	0	11	0	0	copy fasta	EXOC2	chr6	480154	698139
EXOC2_chr6_480154_698139	0/0	c0005	2775	4	4	0	0	0	0	copy fasta	EXOC2	chr6	480154	698139
EXOC2_chr6_480154_698139	0/0	c0006	2775	4	0	0	4	0	0	copy fasta	EXOC2	chr6	480154	698139
EXOC2_chr6_480154_698139	0/0	c0007	2775	3	3	0	0	0	0	copy fasta	EXOC2	chr6	480154	698139
EXOC2_chr6_480154_698139	0/0	c0008	2775	2	2	0	0	0	0	copy fasta	EXOC2	chr6	480154	698139
EXOC2_chr6_480154_698139	0/0	c0009	2775	2	2	0	0	0	0	copy fasta	EXOC2	chr6	480154	698139
EXOC2_chr6_480154_698139	0/0	c0010	2775	2	2	0	0	0	0	copy fasta	EXOC2	chr6	480154	698139
EXOC2_chr6_480154_698139	0/0	c0011	2775	1	1	0	0	0	0	copy fasta	EXOC2	chr6	480154	698139
EXOC2_chr6_480154_698139	0/0	c0012	2775	1	0	0	1	0	0	copy fasta	EXOC2	chr6	480154	698139
EXOC2_chr6_480154_698139	0/0	c0013	2775	1	0	1	0	0	0	copy fasta	EXOC2	chr6	480154	698139
EXOC2_chr6_480154_698139	0/0	c0014	2775	1	1	0	0	0	0	copy fasta	EXOC2	chr6	480154	698139
EXOC2_chr6_480154_698139	0/0	c0015	2775	1	0	1	0	0	0	copy fasta	EXOC2	chr6	480154	698139
EXOC2_chr6_480154_698139	0/0	c0016	2775	1	0	1	0	0	0	copy fasta	EXOC2	chr6	480154	698139
EXOC2_chr6_480154_698139	0/0	c0017	2775	1	0	0	1	0	0	copy fasta	EXOC2	chr6	480154	698139
EXOC2_chr6_480154_698139	0/0	c0018	2775	1	1	0	0	0	0	copy fasta	EXOC2	chr6	480154	698139
EXOC2_chr6_480154_698139	0/0	c0019	2775	1	1	0	0	0	0	copy fasta	EXOC2	chr6	480154	698139
EXOC2_chr6_480154_698139	0/0	c0020	2775	1	1	0	0	0	0	copy fasta	EXOC2	chr6	480154	698139
EXOC2_chr6_480154_698139	0/0	c0021	2775	1	1	0	0	0	0	copy fasta	EXOC2	chr6	480154	698139
EXOC2_chr6_480154_698139	0/0	c0022	2775	1	1	0	0	0	0	copy fasta	EXOC2	chr6	480154	698139
EXOC2_chr6_480154_698139	0/0	c0023	2775	1	1	0	0	0	0	copy fasta	EXOC2	chr6	480154	698139
EXOC3L1_chr16_67179379_67195136	1/1	c0001	2241	216	36	56	94	8	20	copy fasta	EXOC3L1	chr16	67179379	67195136
EXOC3L1_chr16_67179379_67195136	0/0	c0002	2241	32	19	4	0	1	8	copy fasta	EXOC3L1	chr16	67179379	67195136
EXOC3L1_chr16_67179379_67195136	0/0	c0003	2241	29	23	1	4	0	1	copy fasta	EXOC3L1	chr16	67179379	67195136
EXOC3L1_chr16_67179379_67195136	0/0	c0004	2241	10	10	0	0	0	0	copy fasta	EXOC3L1	chr16	67179379	67195136
EXOC3L1_chr16_67179379_67195136	0/0	c0005	2241	4	0	0	4	0	0	copy fasta	EXOC3L1	chr16	67179379	67195136
EXOC3L1_chr16_67179379_67195136	0/0	c0006	2241	3	3	0	0	0	0	copy fasta	EXOC3L1	chr16	67179379	67195136
EXOC3L1_chr16_67179379_67195136	0/0	c0007	2241	2	0	0	2	0	0	copy fasta	EXOC3L1	chr16	67179379	67195136
EXOC3L1_chr16_67179379_67195136	0/0	c0008	2241	2	0	0	2	0	0	copy fasta	EXOC3L1	chr16	67179379	67195136
EXOC3L1_chr16_67179379_67195136	0/0	c0009	2241	2	0	0	2	0	0	copy fasta	EXOC3L1	chr16	67179379	67195136
EXOC3L1_chr16_67179379_67195136	0/0	c0010	2241	2	2	0	0	0	0	copy fasta	EXOC3L1	chr16	67179379	67195136
EXOC3L1_chr16_67179379_67195136	0/0	c0011	2241	2	1	0	0	1	0	copy fasta	EXOC3L1	chr16	67179379	67195136
EXOC3L1_chr16_67179379_67195136	0/0	c0012	2241	1	0	1	0	0	0	copy fasta	EXOC3L1	chr16	67179379	67195136
EXOC3L1_chr16_67179379_67195136	0/0	c0013	2241	1	1	0	0	0	0	copy fasta	EXOC3L1	chr16	67179379	67195136
EXOC3L1_chr16_67179379_67195136	0/0	c0014	2241	1	0	1	0	0	0	copy fasta	EXOC3L1	chr16	67179379	67195136
EXOC3L1_chr16_67179379_67195136	0/0	c0015	2241	1	0	1	0	0	0	copy fasta	EXOC3L1	chr16	67179379	67195136
EXOC3L1_chr16_67179379_67195136	0/0	c0016	2241	1	1	0	0	0	0	copy fasta	EXOC3L1	chr16	67179379	67195136
EXOC3L1_chr16_67179379_67195136	0/0	c0017	2241	1	0	0	1	0	0	copy fasta	EXOC3L1	chr16	67179379	67195136
EXOC3L1_chr16_67179379_67195136	0/0	c0018	2241	1	0	0	1	0	0	copy fasta	EXOC3L1	chr16	67179379	67195136
EXOC3L1_chr16_67179379_67195136	0/0	c0019	2241	1	0	0	0	0	1	copy fasta	EXOC3L1	chr16	67179379	67195136
EXOC3L1_chr16_67179379_67195136	0/0	c0020	2241	1	0	0	0	1	0	copy fasta	EXOC3L1	chr16	67179379	67195136
EXOC3L1_chr16_67179379_67195136	0/0	c0021	2241	1	0	0	0	1	0	copy fasta	EXOC3L1	chr16	67179379	67195136
EXOC3L2_chr19_45207370_45250407	1/1	c0001	2409	178	20	44	86	8	18	copy fasta	EXOC3L2	chr19	45207370	45250407
EXOC3L2_chr19_45207370_45250407	0/0	c0002	2409	51	14	6	21	4	6	copy fasta	EXOC3L2	chr19	45207370	45250407
EXOC3L2_chr19_45207370_45250407	0/0	c0003	2409	32	4	2	20	0	6	copy fasta	EXOC3L2	chr19	45207370	45250407
EXOC3L2_chr19_45207370_45250407	0/0	c0004	2409	16	0	8	0	2	6	copy fasta	EXOC3L2	chr19	45207370	45250407
EXOC3L2_chr19_45207370_45250407	0/0	c0005	2409	9	8	1	0	0	0	copy fasta	EXOC3L2	chr19	45207370	45250407
EXOC3L2_chr19_45207370_45250407	0/0	c0006	2409	8	8	0	0	0	0	copy fasta	EXOC3L2	chr19	45207370	45250407
EXOC3L2_chr19_45207370_45250407	0/0	c0007	2409	8	6	2	0	0	0	copy fasta	EXOC3L2	chr19	45207370	45250407
EXOC3L2_chr19_45207370_45250407	0/0	c0008	2409	6	5	0	0	1	0	copy fasta	EXOC3L2	chr19	45207370	45250407
EXOC3L2_chr19_45207370_45250407	0/0	c0009	2409	5	3	2	0	0	0	copy fasta	EXOC3L2	chr19	45207370	45250407