JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EXOC3L4_chr14_103089725_103115559	0/0	c0027	2169	2	2	0	0	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	c0028	2169	2	2	0	0	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	c0029	2169	2	2	0	0	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	c0030	2169	2	0	0	2	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	c0031	2169	2	0	0	2	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	c0032	2169	2	2	0	0	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	c0033	2169	2	1	1	0	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	c0034	2169	1	1	0	0	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	c0035	2169	1	1	0	0	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	c0036	2169	1	1	0	0	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	c0037	2169	1	1	0	0	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	c0038	2169	1	1	0	0	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	c0039	2169	1	0	1	0	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	c0040	2169	1	1	0	0	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	c0041	2169	1	0	0	1	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	c0042	2169	1	0	0	1	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	c0043	2151	1	0	0	1	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	c0044	2169	1	0	0	1	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/1	c0045	2169	1	0	0	0	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	c0046	2169	1	0	0	0	1	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	c0047	2169	1	1	0	0	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	c0048	2169	1	0	1	0	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	c0049	2169	1	1	0	0	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	c0050	2169	1	1	0	0	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	c0051	2169	1	0	1	0	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	1/0	c0052	2169	1	0	0	0	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	c0053	2169	1	0	0	1	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	c0054	2169	1	1	0	0	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	c0055	2169	1	0	0	0	0	1	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	c0056	2169	1	0	0	1	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	c0057	2169	1	0	0	1	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	c0058	2169	1	0	0	1	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	c0059	2169	1	0	0	1	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	c0060	2169	1	0	0	1	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	c0061	2169	1	1	0	0	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	c0062	2169	1	1	0	0	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	c0063	2169	1	0	0	1	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	c0064	2169	1	1	0	0	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	c0065	2169	1	1	0	0	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	c0066	2169	1	0	0	1	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	c0067	2154	1	0	0	1	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	c0068	2169	1	0	0	1	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	c0069	2169	1	0	1	0	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	c0070	2169	1	0	0	0	0	1	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	c0071	2169	1	0	0	1	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	c0072	2169	1	0	0	1	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	c0073	2169	1	0	0	1	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3L4_chr14_103089725_103115559	0/0	c0074	2169	1	1	0	0	0	0	copy fasta	EXOC3L4	chr14	103089725	103115559
EXOC3_chr5_438176_472290	0/0	c0001	2238	217	65	37	87	8	20	copy fasta	EXOC3	chr5	438176	472290
EXOC3_chr5_438176_472290	1/1	c0002	2238	150	4	29	78	9	28	copy fasta	EXOC3	chr5	438176	472290