JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EXOC3_chr5_438176_472290	0/0	c0003	2238	23	7	10	5	1	0	copy fasta	EXOC3	chr5	438176	472290
EXOC3_chr5_438176_472290	0/0	c0004	2238	7	7	0	0	0	0	copy fasta	EXOC3	chr5	438176	472290
EXOC3_chr5_438176_472290	0/0	c0005	2238	7	0	4	3	0	0	copy fasta	EXOC3	chr5	438176	472290
EXOC3_chr5_438176_472290	0/0	c0006	2238	4	4	0	0	0	0	copy fasta	EXOC3	chr5	438176	472290
EXOC3_chr5_438176_472290	0/0	c0007	2238	2	1	0	1	0	0	copy fasta	EXOC3	chr5	438176	472290
EXOC3_chr5_438176_472290	0/0	c0008	2238	2	0	0	2	0	0	copy fasta	EXOC3	chr5	438176	472290
EXOC3_chr5_438176_472290	0/0	c0009	2238	1	1	0	0	0	0	copy fasta	EXOC3	chr5	438176	472290
EXOC3_chr5_438176_472290	0/0	c0010	2238	1	0	0	0	0	1	copy fasta	EXOC3	chr5	438176	472290
EXOC3_chr5_438176_472290	0/0	c0011	2238	1	0	0	1	0	0	copy fasta	EXOC3	chr5	438176	472290
EXOC3_chr5_438176_472290	0/0	c0012	2238	1	0	0	0	0	1	copy fasta	EXOC3	chr5	438176	472290
EXOC3_chr5_438176_472290	0/0	c0013	2238	1	0	0	1	0	0	copy fasta	EXOC3	chr5	438176	472290
EXOC3_chr5_438176_472290	0/0	c0014	2238	1	1	0	0	0	0	copy fasta	EXOC3	chr5	438176	472290
EXOC4_chr7_133248078_134070761	0/1	c0001	2925	34	18	7	7	0	1	copy fasta	EXOC4	chr7	133248078	134070761
EXOC4_chr7_133248078_134070761	0/0	c0002	2925	26	10	10	4	2	0	copy fasta	EXOC4	chr7	133248078	134070761
EXOC4_chr7_133248078_134070761	1/0	c0003	2925	18	5	1	9	0	2	copy fasta	EXOC4	chr7	133248078	134070761
EXOC4_chr7_133248078_134070761	0/0	c0004	2925	15	3	1	8	2	1	copy fasta	EXOC4	chr7	133248078	134070761
EXOC4_chr7_133248078_134070761	0/0	c0005	2925	5	4	1	0	0	0	copy fasta	EXOC4	chr7	133248078	134070761
EXOC4_chr7_133248078_134070761	0/0	c0006	2925	2	2	0	0	0	0	copy fasta	EXOC4	chr7	133248078	134070761
EXOC4_chr7_133248078_134070761	0/0	c0007	2925	1	1	0	0	0	0	copy fasta	EXOC4	chr7	133248078	134070761
EXOC4_chr7_133248078_134070761	0/0	c0008	2925	1	1	0	0	0	0	copy fasta	EXOC4	chr7	133248078	134070761
EXOC5_chr14_57195507_57273905	1/1	c0001	2127	111	15	31	43	4	16	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	c0002	2127	96	63	17	15	0	1	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	c0003	2127	5	5	0	0	0	0	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	c0004	2127	1	0	0	0	0	1	copy fasta	EXOC5	chr14	57195507	57273905
EXOC5_chr14_57195507_57273905	0/0	c0005	2127	1	1	0	0	0	0	copy fasta	EXOC5	chr14	57195507	57273905
EXOC6B_chr2_72170984_72831033	0/1	c0001	2436	37	25	6	0	3	2	copy fasta	EXOC6B	chr2	72170984	72831033
EXOC6B_chr2_72170984_72831033	0/0	c0002	2436	35	23	6	1	3	2	copy fasta	EXOC6B	chr2	72170984	72831033
EXOC6B_chr2_72170984_72831033	1/0	c0003	2436	22	6	8	1	2	4	copy fasta	EXOC6B	chr2	72170984	72831033
EXOC6B_chr2_72170984_72831033	0/0	c0004	2436	3	3	0	0	0	0	copy fasta	EXOC6B	chr2	72170984	72831033
EXOC6B_chr2_72170984_72831033	0/0	c0005	2436	2	1	1	0	0	0	copy fasta	EXOC6B	chr2	72170984	72831033
EXOC6B_chr2_72170984_72831033	0/0	c0006	2436	2	2	0	0	0	0	copy fasta	EXOC6B	chr2	72170984	72831033
EXOC6B_chr2_72170984_72831033	0/0	c0007	2436	1	1	0	0	0	0	copy fasta	EXOC6B	chr2	72170984	72831033
EXOC6B_chr2_72170984_72831033	0/0	c0008	2436	1	0	1	0	0	0	copy fasta	EXOC6B	chr2	72170984	72831033
EXOC6B_chr2_72170984_72831033	0/0	c0009	2436	1	1	0	0	0	0	copy fasta	EXOC6B	chr2	72170984	72831033
EXOC6_chr10_92843520_93064490	0/1	c0001	2415	237	72	36	98	6	24	copy fasta	EXOC6	chr10	92843520	93064490
EXOC6_chr10_92843520_93064490	1/0	c0002	2415	20	0	10	1	3	5	copy fasta	EXOC6	chr10	92843520	93064490
EXOC6_chr10_92843520_93064490	0/0	c0003	2415	18	7	8	1	1	1	copy fasta	EXOC6	chr10	92843520	93064490
EXOC6_chr10_92843520_93064490	0/0	c0004	2415	4	0	1	0	1	2	copy fasta	EXOC6	chr10	92843520	93064490
EXOC6_chr10_92843520_93064490	0/0	c0005	2415	4	4	0	0	0	0	copy fasta	EXOC6	chr10	92843520	93064490
EXOC6_chr10_92843520_93064490	0/0	c0006	2415	2	0	1	0	1	0	copy fasta	EXOC6	chr10	92843520	93064490
EXOC6_chr10_92843520_93064490	0/0	c0007	2415	1	1	0	0	0	0	copy fasta	EXOC6	chr10	92843520	93064490
EXOC6_chr10_92843520_93064490	0/0	c0008	2415	1	0	0	1	0	0	copy fasta	EXOC6	chr10	92843520	93064490
EXOC6_chr10_92843520_93064490	0/0	c0009	2415	1	0	0	1	0	0	copy fasta	EXOC6	chr10	92843520	93064490
EXOC7_chr17_76076016_76108787	1/1	c0001	2055	327	66	63	147	16	33	copy fasta	EXOC7	chr17	76076016	76108787
EXOC7_chr17_76076016_76108787	0/0	c0002	2055	17	16	1	0	0	0	copy fasta	EXOC7	chr17	76076016	76108787
EXOC7_chr17_76076016_76108787	0/0	c0003	2055	4	4	0	0	0	0	copy fasta	EXOC7	chr17	76076016	76108787
EXOC7_chr17_76076016_76108787	0/0	c0004	2055	2	0	2	0	0	0	copy fasta	EXOC7	chr17	76076016	76108787
EXOC7_chr17_76076016_76108787	0/0	c0005	2055	2	2	0	0	0	0	copy fasta	EXOC7	chr17	76076016	76108787
EXOC7_chr17_76076016_76108787	0/0	c0006	2055	2	0	0	2	0	0	copy fasta	EXOC7	chr17	76076016	76108787
EXOC7_chr17_76076016_76108787	0/0	c0007	2055	2	0	0	2	0	0	copy fasta	EXOC7	chr17	76076016	76108787