JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EXOC7_chr17_76076016_76108787	0/0	c0008	2055	2	0	0	2	0	0	copy fasta	EXOC7	chr17	76076016	76108787
EXOC7_chr17_76076016_76108787	0/0	c0009	2055	2	1	0	0	0	1	copy fasta	EXOC7	chr17	76076016	76108787
EXOC7_chr17_76076016_76108787	0/0	c0010	2055	1	1	0	0	0	0	copy fasta	EXOC7	chr17	76076016	76108787
EXOC7_chr17_76076016_76108787	0/0	c0011	2055	1	0	0	1	0	0	copy fasta	EXOC7	chr17	76076016	76108787
EXOC7_chr17_76076016_76108787	0/0	c0012	2055	1	0	0	1	0	0	copy fasta	EXOC7	chr17	76076016	76108787
EXOC7_chr17_76076016_76108787	0/0	c0013	2055	1	0	0	1	0	0	copy fasta	EXOC7	chr17	76076016	76108787
EXOC7_chr17_76076016_76108787	0/0	c0014	2055	1	0	0	1	0	0	copy fasta	EXOC7	chr17	76076016	76108787
EXOC7_chr17_76076016_76108787	0/0	c0015	2055	1	0	0	1	0	0	copy fasta	EXOC7	chr17	76076016	76108787
EXOC8_chr1_231327753_231342852	1/1	c0001	2178	359	62	59	179	15	42	copy fasta	EXOC8	chr1	231327753	231342852
EXOC8_chr1_231327753_231342852	0/0	c0002	2178	6	6	0	0	0	0	copy fasta	EXOC8	chr1	231327753	231342852
EXOC8_chr1_231327753_231342852	0/0	c0003	2184	5	5	0	0	0	0	copy fasta	EXOC8	chr1	231327753	231342852
EXOC8_chr1_231327753_231342852	0/0	c0004	2178	4	4	0	0	0	0	copy fasta	EXOC8	chr1	231327753	231342852
EXOC8_chr1_231327753_231342852	0/0	c0005	2178	3	3	0	0	0	0	copy fasta	EXOC8	chr1	231327753	231342852
EXOC8_chr1_231327753_231342852	0/0	c0006	2178	2	2	0	0	0	0	copy fasta	EXOC8	chr1	231327753	231342852
EXOC8_chr1_231327753_231342852	0/0	c0007	2178	2	0	0	0	0	2	copy fasta	EXOC8	chr1	231327753	231342852
EXOC8_chr1_231327753_231342852	0/0	c0008	2178	1	1	0	0	0	0	copy fasta	EXOC8	chr1	231327753	231342852
EXOC8_chr1_231327753_231342852	0/0	c0009	2178	1	0	0	1	0	0	copy fasta	EXOC8	chr1	231327753	231342852
EXOC8_chr1_231327753_231342852	0/0	c0010	2178	1	1	0	0	0	0	copy fasta	EXOC8	chr1	231327753	231342852
EXOC8_chr1_231327753_231342852	0/0	c0011	2178	1	0	0	1	0	0	copy fasta	EXOC8	chr1	231327753	231342852
EXOC8_chr1_231327753_231342852	0/0	c0012	2178	1	0	1	0	0	0	copy fasta	EXOC8	chr1	231327753	231342852
EXOC8_chr1_231327753_231342852	0/0	c0013	2178	1	0	0	1	0	0	copy fasta	EXOC8	chr1	231327753	231342852
EXOC8_chr1_231327753_231342852	0/0	c0014	2178	1	0	0	0	1	0	copy fasta	EXOC8	chr1	231327753	231342852
EXOG_chr3_38491340_38531303	1/1	c0001	1107	406	90	74	190	10	40	copy fasta	EXOG	chr3	38491340	38531303
EXOG_chr3_38491340_38531303	0/0	c0002	1107	2	2	0	0	0	0	copy fasta	EXOG	chr3	38491340	38531303
EXOG_chr3_38491340_38531303	0/0	c0003	1107	1	0	0	1	0	0	copy fasta	EXOG	chr3	38491340	38531303
EXOG_chr3_38491340_38531303	0/0	c0004	1107	1	0	0	1	0	0	copy fasta	EXOG	chr3	38491340	38531303
EXOG_chr3_38491340_38531303	0/0	c0005	1107	1	0	0	1	0	0	copy fasta	EXOG	chr3	38491340	38531303
EXOG_chr3_38491340_38531303	0/0	c0006	1107	1	0	0	1	0	0	copy fasta	EXOG	chr3	38491340	38531303
EXOSC10_chr1_11061618_11104869	0/0	c0001	2658	109	17	27	39	9	17	copy fasta	EXOSC10	chr1	11061618	11104869
EXOSC10_chr1_11061618_11104869	1/0	c0002	2658	64	39	8	11	2	3	copy fasta	EXOSC10	chr1	11061618	11104869
EXOSC10_chr1_11061618_11104869	0/0	c0003	2658	47	9	9	20	0	9	copy fasta	EXOSC10	chr1	11061618	11104869
EXOSC10_chr1_11061618_11104869	0/0	c0004	2658	16	0	5	6	0	5	copy fasta	EXOSC10	chr1	11061618	11104869
EXOSC10_chr1_11061618_11104869	0/0	c0005	2658	13	12	1	0	0	0	copy fasta	EXOSC10	chr1	11061618	11104869
EXOSC10_chr1_11061618_11104869	0/0	c0006	2658	5	5	0	0	0	0	copy fasta	EXOSC10	chr1	11061618	11104869
EXOSC10_chr1_11061618_11104869	0/0	c0007	2658	5	5	0	0	0	0	copy fasta	EXOSC10	chr1	11061618	11104869
EXOSC10_chr1_11061618_11104869	0/1	c0008	2658	4	0	1	0	0	2	copy fasta	EXOSC10	chr1	11061618	11104869
EXOSC10_chr1_11061618_11104869	0/0	c0009	2658	3	0	0	3	0	0	copy fasta	EXOSC10	chr1	11061618	11104869
EXOSC10_chr1_11061618_11104869	0/0	c0010	2658	2	2	0	0	0	0	copy fasta	EXOSC10	chr1	11061618	11104869
EXOSC10_chr1_11061618_11104869	0/0	c0011	2658	2	0	0	2	0	0	copy fasta	EXOSC10	chr1	11061618	11104869
EXOSC10_chr1_11061618_11104869	0/0	c0012	2658	1	0	0	1	0	0	copy fasta	EXOSC10	chr1	11061618	11104869
EXOSC10_chr1_11061618_11104869	0/0	c0013	2658	1	0	1	0	0	0	copy fasta	EXOSC10	chr1	11061618	11104869
EXOSC10_chr1_11061618_11104869	0/0	c0014	2658	1	0	0	0	0	1	copy fasta	EXOSC10	chr1	11061618	11104869
EXOSC10_chr1_11061618_11104869	0/0	c0015	2658	1	0	1	0	0	0	copy fasta	EXOSC10	chr1	11061618	11104869
EXOSC10_chr1_11061618_11104869	0/0	c0016	2658	1	0	0	1	0	0	copy fasta	EXOSC10	chr1	11061618	11104869
EXOSC10_chr1_11061618_11104869	0/0	c0017	2658	1	0	0	0	0	1	copy fasta	EXOSC10	chr1	11061618	11104869
EXOSC10_chr1_11061618_11104869	0/0	c0018	2658	1	1	0	0	0	0	copy fasta	EXOSC10	chr1	11061618	11104869
EXOSC10_chr1_11061618_11104869	0/0	c0019	2658	1	1	0	0	0	0	copy fasta	EXOSC10	chr1	11061618	11104869
EXOSC10_chr1_11061618_11104869	0/0	c0020	2658	1	1	0	0	0	0	copy fasta	EXOSC10	chr1	11061618	11104869
EXOSC10_chr1_11061618_11104869	0/0	c0021	2658	1	1	0	0	0	0	copy fasta	EXOSC10	chr1	11061618	11104869
EXOSC10_chr1_11061618_11104869	0/0	c0022	2658	1	0	1	0	0	0	copy fasta	EXOSC10	chr1	11061618	11104869