JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
EXOSC10_chr1_11061618_11104869	0/0	c0023	2658	1	0	0	0	1	0	copy fasta	EXOSC10	chr1	11061618	11104869
EXOSC10_chr1_11061618_11104869	0/0	c0024	2658	1	0	0	1	0	0	copy fasta	EXOSC10	chr1	11061618	11104869
EXOSC10_chr1_11061618_11104869	0/0	c0025	2658	1	1	0	0	0	0	copy fasta	EXOSC10	chr1	11061618	11104869
EXOSC1_chr10_97430909_97451006	1/1	c0001	588	391	79	68	186	12	44	copy fasta	EXOSC1	chr10	97430909	97451006
EXOSC1_chr10_97430909_97451006	0/0	c0002	588	38	11	10	13	2	2	copy fasta	EXOSC1	chr10	97430909	97451006
EXOSC1_chr10_97430909_97451006	0/0	c0003	588	1	0	0	1	0	0	copy fasta	EXOSC1	chr10	97430909	97451006
EXOSC2_chr9_130688780_130709892	1/1	c0001	882	408	95	80	167	18	46	copy fasta	EXOSC2	chr9	130688780	130709892
EXOSC2_chr9_130688780_130709892	0/0	c0002	882	13	0	0	13	0	0	copy fasta	EXOSC2	chr9	130688780	130709892
EXOSC2_chr9_130688780_130709892	0/0	c0003	882	2	0	0	2	0	0	copy fasta	EXOSC2	chr9	130688780	130709892
EXOSC2_chr9_130688780_130709892	0/0	c0004	882	2	0	2	0	0	0	copy fasta	EXOSC2	chr9	130688780	130709892
EXOSC2_chr9_130688780_130709892	0/0	c0005	882	1	1	0	0	0	0	copy fasta	EXOSC2	chr9	130688780	130709892
EXOSC3_chr9_37774714_37790064	0/0	c0001	828	250	54	48	117	4	27	copy fasta	EXOSC3	chr9	37774714	37790064
EXOSC3_chr9_37774714_37790064	1/0	c0002	828	173	28	30	89	7	18	copy fasta	EXOSC3	chr9	37774714	37790064
EXOSC3_chr9_37774714_37790064	0/1	c0003	828	4	0	1	0	1	1	copy fasta	EXOSC3	chr9	37774714	37790064
EXOSC3_chr9_37774714_37790064	0/0	c0004	828	1	0	1	0	0	0	copy fasta	EXOSC3	chr9	37774714	37790064
EXOSC3_chr9_37774714_37790064	0/0	c0005	828	1	1	0	0	0	0	copy fasta	EXOSC3	chr9	37774714	37790064
EXOSC3_chr9_37774714_37790064	0/0	c0006	828	1	1	0	0	0	0	copy fasta	EXOSC3	chr9	37774714	37790064
EXOSC3_chr9_37774714_37790064	0/0	c0007	828	1	1	0	0	0	0	copy fasta	EXOSC3	chr9	37774714	37790064
EXOSC3_chr9_37774714_37790064	0/0	c0008	828	1	1	0	0	0	0	copy fasta	EXOSC3	chr9	37774714	37790064
EXOSC4_chr8_144073672_144085648	1/1	c0001	738	291	87	69	88	10	35	copy fasta	EXOSC4	chr8	144073672	144085648
EXOSC4_chr8_144073672_144085648	0/0	c0002	738	2	2	0	0	0	0	copy fasta	EXOSC4	chr8	144073672	144085648
EXOSC4_chr8_144073672_144085648	0/0	c0003	738	2	2	0	0	0	0	copy fasta	EXOSC4	chr8	144073672	144085648
EXOSC4_chr8_144073672_144085648	0/0	c0004	738	2	2	0	0	0	0	copy fasta	EXOSC4	chr8	144073672	144085648
EXOSC4_chr8_144073672_144085648	0/0	c0005	738	2	0	2	0	0	0	copy fasta	EXOSC4	chr8	144073672	144085648
EXOSC4_chr8_144073672_144085648	0/0	c0006	738	1	0	1	0	0	0	copy fasta	EXOSC4	chr8	144073672	144085648
EXOSC4_chr8_144073672_144085648	0/0	c0007	738	1	0	0	0	0	1	copy fasta	EXOSC4	chr8	144073672	144085648
EXOSC4_chr8_144073672_144085648	0/0	c0008	738	1	1	0	0	0	0	copy fasta	EXOSC4	chr8	144073672	144085648
EXOSC5_chr19_41381374_41402359	0/1	c0001	708	229	63	37	87	12	29	copy fasta	EXOSC5	chr19	41381374	41402359
EXOSC5_chr19_41381374_41402359	1/0	c0002	708	156	20	30	87	4	14	copy fasta	EXOSC5	chr19	41381374	41402359
EXOSC5_chr19_41381374_41402359	0/0	c0003	708	8	7	1	0	0	0	copy fasta	EXOSC5	chr19	41381374	41402359
EXOSC5_chr19_41381374_41402359	0/0	c0004	708	1	1	0	0	0	0	copy fasta	EXOSC5	chr19	41381374	41402359
EXOSC5_chr19_41381374_41402359	0/0	c0005	708	1	0	0	0	0	1	copy fasta	EXOSC5	chr19	41381374	41402359
EXOSC5_chr19_41381374_41402359	0/0	c0006	708	1	1	0	0	0	0	copy fasta	EXOSC5	chr19	41381374	41402359
EXOSC6_chr16_70241778_70256940	1/1	c0001	819	375	55	73	186	14	45	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	c0002	819	23	23	0	0	0	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	c0003	819	5	5	0	0	0	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	c0004	819	5	0	0	5	0	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	c0005	819	4	4	0	0	0	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	c0006	819	3	3	0	0	0	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	c0007	819	1	0	0	0	0	1	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	c0008	819	1	0	1	0	0	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	c0009	819	1	1	0	0	0	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	c0010	819	1	1	0	0	0	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC6_chr16_70241778_70256940	0/0	c0011	819	1	0	0	1	0	0	copy fasta	EXOSC6	chr16	70241778	70256940
EXOSC7_chr3_44971244_45016471	0/0	c0001	876	207	59	35	83	7	23	copy fasta	EXOSC7	chr3	44971244	45016471
EXOSC7_chr3_44971244_45016471	1/1	c0002	876	91	22	28	24	7	8	copy fasta	EXOSC7	chr3	44971244	45016471
EXOSC7_chr3_44971244_45016471	0/0	c0003	876	18	0	5	7	2	4	copy fasta	EXOSC7	chr3	44971244	45016471
EXOSC7_chr3_44971244_45016471	0/0	c0004	876	13	10	3	0	0	0	copy fasta	EXOSC7	chr3	44971244	45016471
EXOSC7_chr3_44971244_45016471	0/0	c0005	876	3	3	0	0	0	0	copy fasta	EXOSC7	chr3	44971244	45016471
EXOSC7_chr3_44971244_45016471	0/0	c0006	876	2	0	2	0	0	0	copy fasta	EXOSC7	chr3	44971244	45016471